Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01549 ATGGATTCGTCTTCTTCATCATCTTCGAATCCTAAATGGATACACGACGTGTTCCTCAATTTTAGAGGAGAAGACACTCGTCCGGGCTTCATTTCTCATCTCTATGCTGCCTTAAAAAATGCTGGAGTCAATGCATATATTGACCGTCATCTTCCTAAGGGAACTGAGCTGGGACCAGAACTATCACGAGCAATAGAAGGGTCTCATATATCTATTGCTGTTTTCTCCAAAAGATATGCCGAATCTAGTTGGTGTCTTAATGAGCTGAAAAAGATCATTGAATGCCACAGAAATCATGGTCAGGTGGTTGTCCCTGTATTTTATGATGTTGACCCGTCAGAAGTGCGCCGCCAGAATGGTGATTTTGGGATATATTTGAGACGTACTGTAAAAGAAAAATACATTGACTCGGGAGAGGAAAGGATGGAATATATGCTGTCCAAGTGGAGGAGTGCACTCACCGAAGCTGCTCATTTATCTGGTTGGGATGTCAACAATTGCAGGAATGAAGCCGAACTGGTGCAACAAATTGTTGAGGACATTTTGACAAAACTAGATATTGCATCCTTGTCTATTACTGAATTCCCAGTTGGATTGGATTCCCGTGTACAACAAATAATTGAGTTCATTGAAAATGAATCAAGCCAGGTCTGTATAATAGGGATATGGGGAATGGGTGGATCTGGTAAAACAACCACAGCTAAAGCTATCTACAATCGAATTCATCGCAAGTTTGTTGATAGAAGTTTCGTTGAAAATGTTAGAGAAGTCTGTGAAAAGGAAAATAGAGGGATTATTCATTTACAAGAACAACTACTTTCAAATATCTTGAACACAAAGGAGAAGATATACAGCATTGCATTAGGGACAACTAAGATAGAGAAAATATTTTGGGGAAAAAAAGCACTTGTTGTACTCGATGATGTGACTACATTTGAACAGATAAAATCGCTATGTAGAAATCCTAAATTGCTAGGTATGGGAAGTGTGTTAATTGTTACAACCAGAGATGTTCGCCTACTTAATTTATTAAAGGTAGATTTTTTGTGTACAATGAAGGAAATGGGCAAAAATGAATCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGACAACCTAGTCCAAACAAAGACTTTTTTGAACTCTCGAGGAAACTAGTTGCTTATTGTGGAGGATTACCGGTTGCTCTTGAAGTCCTTGGTTCTTACTTATGGGAGAGGACAAAAGAAGAATGGACAAGTGTACTCTCAAAACTAAAGACAATTCCCAATGATCAAGTGCAAGAGAAATTGAGAATAAGCTATGATGGTTTAAAGGATGATATGGAAAAGGACATATTTCTTGACATATGTTGTTTCTTCATCGGCAAGGACAGAGCGTACGTTTCTGAGATACTAAATGGTTGCGGGCTTCATGCTGATATTGGAATATCTGTCCTCGTAGAACGGAGTCTTGTCAAAATTGAAAAGAATAACAAGCTTGCAATGCATGACTTAATAAGAGATATGGGAAGAGAAATTGTTCGCAAACGTTCAGCAAAAGAGCCTGGGAAGCGTAGTCGATTGTGGTCTTGTGTGGATGCACATGATGTTTTAACAAAACATACTGGAACAGAAACTGTAGAAGGACTGGCTTTGAAGTTGCAAAGAACCAACAGAGTTTGCTTCAATGCTCATTCTTTTAATGAGATGAAGAATCTGAGACTACTACAAATTGATTGTGTTGACCTCACTGGAGATTATGGGTATCTTTCTAAAGAGCTCAGATGGATCCATTGGCAACAATCCACCTTCAACTCTATACCTAATGACTTTTATCTGGGAAATCTAGTTGTTATTGACTTGAAACACAGTAGAATTAGGCAAGTTTGGAATGAAACCGAGTTGCTGGGGAACCTAAAAATTCTCAATCTCAGTCATTCCAAGTACTTGAAAAGAACTCCCGACTTTTCAAAATCACCGAATCTAGAAAAGCTCATCATGAAAGATTGTCCAAACTTATCTGAGGTACACCAATCCATTGGAGATCTCAATAATCTTCTTCTGATAAATTTGAAGGACTGTACAACTCTTAGCGATCTCCCAAAGAAGATCTATCAATTGAAATCTGTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGACATAGTGCAGATGGAATCCTTGACAACATTGATTGCCAAAGATACCTCTATAAAAGAGGTGCCATGTTCAATCATAAGATCGAAAAGCATTGGATACATATCCCTATGTGGATATGAAGGATTATCATGTAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCTCCGACCATAAATTCTCTACCCTGCATTTCCCCATTTGGGAACATTTCATTGTCCCTGTCTTCCACCAATTTACATAATAATAACTTGGGCCTTCTATCACCAATGGTCATAAGCCTTTCAAAAATCAGAACTGTTTGGGTACAATGCCGCTCGAAGATTCAACTAACACAAGAATTACAAAGAGTTCTTGATCAATATGTTGTAAATGTTTCTGAATTGGAAACATCACATGCATCACAAATTTCAAATCTTTTCTTTAGATCGCTGTTGATTGGAATGGGAAGTTGCCACATAGTCATAGATACTCCTGGCAAGAGCTTATCACAGGGATTAACCGATGATTCGAGGGATTTTTTCCTTCCAGGTGGCAATTATCCTTCTTGGTTGGCCTTTACAGGCGAAGGACCCTCGGCACAATTTCAAGTTCCTGACGATATTGATTGTCACGTGAAGGGAATAATCTTATGTGTTATTTATTCATCAACCTCAGAAAACATTGGAGCTGAATGTCTTACTAGTGTCTTGATCATTAATTACACAAAGTGCACCATTCAGATACACAAGCGTGACACGGTAATGTCCTTTAATGATGAAGATTGGAAGAACGTAGCATCAAATCTAGGACCTGGTGACGATGTGGAGATTTTTGTAGCTTTTGGGCATGGGTTGATTGTTAAGGAGACAGTTGTCTATTTATTTTATGATAAGTCAATCACTATGGAATTTGAACAATCAATTATTATGGAAGTTGAGCCATCAACTAGCATGGAAGTGAAGCCATCAGAGGAAGTGAATGTGCAGCCGTCACCAGTAGTGGACGTGCAACCATCACCTAATGCAAGAGTAGAGGCATCAATTACTATGGAACTTGAACAATCAATTACTATGGAAGTTGAGTTATCAACTAACATGGAAACAGAGCCATTAGCCGAAATGGACATGCAGCCATCATCTGAAGTGAACATGCAACCATCACCGAATGTGACAGTCGAGGTATCAACTAACATCGAAGTGAAGCCATCGGGGGAAGTGAGCGTGCAGCCGTTGCCTGTAGTGGATATGCAACCCTCGCCTGTCGTGGATGTGCAACTATCACCTAACATCAAAGTGGAGGCATCAATTACTATGGAAATTGAACAATCAGTTCCTATGGAAGTTGAATTACCAACTAACATGGAAATGGAGCCATTAGCCGAAATGGACGTGCAACCGTCACCTGAAAGGTACATGCAACCATCACCTAATGTTACAGTCGAGGCATCAACTAACGTTAAAACCAATCCGTCGCCAGAAGTGAAGGCGCGGTCATCAGTGCATTTTGAGTCCCAACAAATGGATTATTTGATGATATAA 3678 0.3929 MDSSSSSSSNPKWIHDVFLNFRGEDTRPGFISHLYAALKNAGVNAYIDRHLPKGTELGPELSRAIEGSHISIAVFSKRYAESSWCLNELKKIIECHRNHGQVVVPVFYDVDPSEVRRQNGDFGIYLRRTVKEKYIDSGEERMEYMLSKWRSALTEAAHLSGWDVNNCRNEAELVQQIVEDILTKLDIASLSITEFPVGLDSRVQQIIEFIENESSQVCIIGIWGMGGSGKTTTAKAIYNRIHRKFVDRSFVENVREVCEKENRGIIHLQEQLLSNILNTKEKIYSIALGTTKIEKIFWGKKALVVLDDVTTFEQIKSLCRNPKLLGMGSVLIVTTRDVRLLNLLKVDFLCTMKEMGKNESLELFSWHAFRQPSPNKDFFELSRKLVAYCGGLPVALEVLGSYLWERTKEEWTSVLSKLKTIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVSEILNGCGLHADIGISVLVERSLVKIEKNNKLAMHDLIRDMGREIVRKRSAKEPGKRSRLWSCVDAHDVLTKHTGTETVEGLALKLQRTNRVCFNAHSFNEMKNLRLLQIDCVDLTGDYGYLSKELRWIHWQQSTFNSIPNDFYLGNLVVIDLKHSRIRQVWNETELLGNLKILNLSHSKYLKRTPDFSKSPNLEKLIMKDCPNLSEVHQSIGDLNNLLLINLKDCTTLSDLPKKIYQLKSVKTLILSGCSKIDKLEEDIVQMESLTTLIAKDTSIKEVPCSIIRSKSIGYISLCGYEGLSCNVFPSIIWSWMSPTINSLPCISPFGNISLSLSSTNLHNNNLGLLSPMVISLSKIRTVWVQCRSKIQLTQELQRVLDQYVVNVSELETSHASQISNLFFRSLLIGMGSCHIVIDTPGKSLSQGLTDDSRDFFLPGGNYPSWLAFTGEGPSAQFQVPDDIDCHVKGIILCVIYSSTSENIGAECLTSVLIINYTKCTIQIHKRDTVMSFNDEDWKNVASNLGPGDDVEIFVAFGHGLIVKETVVYLFYDKSITMEFEQSIIMEVEPSTSMEVKPSEEVNVQPSPVVDVQPSPNARVEASITMELEQSITMEVELSTNMETEPLAEMDMQPSSEVNMQPSPNVTVEVSTNIEVKPSGEVSVQPLPVVDMQPSPVVDVQLSPNIKVEASITMEIEQSVPMEVELPTNMEMEPLAEMDVQPSPERYMQPSPNVTVEASTNVKTNPSPEVKARSSVHFESQQMDYLMI 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01549 1225 PRINTS Disease resistance protein signature 389 403 - -
Vifa4g01549 1225 PRINTS Disease resistance protein signature 698 714 - -
Vifa4g01549 1225 PRINTS Disease resistance protein signature 219 234 - -
Vifa4g01549 1225 PRINTS Disease resistance protein signature 296 310 - -
Vifa4g01549 1225 Gene3D - 192 347 IPR027417 -
Vifa4g01549 1225 Pfam TIR domain 15 189 IPR000157 GO:0007165
Vifa4g01549 1225 Gene3D - 9 191 IPR035897 -
Vifa4g01549 1225 ProSiteProfiles TIR domain profile. 13 185 IPR000157 GO:0007165
Vifa4g01549 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
Vifa4g01549 1225 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 162 IPR035897 -
Vifa4g01549 1225 Pfam NB-ARC domain 202 428 IPR002182 GO:0043531
Vifa4g01549 1225 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Vifa4g01549 1225 SMART till_3 14 159 IPR000157 GO:0007165
Vifa4g01549 1225 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 187 - -
Vifa4g01549 1225 Gene3D Ribonuclease Inhibitor 533 870 IPR032675 -
Vifa4g01549 1225 SUPERFAMILY L domain-like 545 845 - -
Vifa4g01549 1225 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 741 IPR044974 GO:0006952
Vifa4g01549 1225 Gene3D - 355 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01549 Vifa-Chr4 452743158 452748764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01549 15 744 WRKY Transcription Factor Family AT4G12020 30.348 1.85e-77 280