Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01546 ATGGATTCTCCTTCTCATTCTTCTTTATCCTCCCATTCTCGTCGATTGATGCACGACGTGTTCATCAGTTTTAATCGAGAAGACACTAGCAAAACTTTCGTTTATGATCTCGACGATGCTCTTTTCAAAGTCGGAATCCATTGTTACATCGATTTCCATGAGGGAACCGATCTGGATTCAGAAGTACTGGAAGCAATTGAAGATGCTCGTGTATCTATCATTGTTTTCTCCAAAAGCTATACAGAATCTAGTCGGTGTCTTAATGAGTTGGAAAAAGTTATGGATTGCCGCGGAACTGGCCAATTTGTTGTCCCTGTGTTTTATGATGTTAACCCTTCGGTTGTTCGTCACCAGAAGGGTGATTTTGGACAAGTTTTGAGGGATACTGCAGAACAAGTATGCTTTCGCTCAGGAGGAGAAGAAAAGATTAATAACGTATTGTCAATTTGGAGCACTGCACTCACCCAAGCTGCTAATTTGTCTGGTTGGCATGTCAACAATTACAGGTATCAAGATAAACAAGTGCGGCTAATTGTTGAGGATGTTATAAGAATGATAGTAATTGAATCTTGGTTTATTTCCTCATTTCCAGTTCGACTGGAGTCCTATGTGCAACAAGTGACTGACTTTATAGAAAATCAATCAAGCCAAGTTTGCTTGATAGGGATATGCGGAATGGGTGGATCCGGTAAAACAACCACAGCCAAATCCATCTACAATAAAATTCGTGGGAATTTTATCAACAGGAGTTTCATTAGAAATGTTAGACAAGTTTGTGAGGAAAATAAGGGGATTATTCGTTTACAACGACAACTACTTTCAGATATCACGAACACAAATGTGATGATAAATAGCATTGCATCAGGGGAAATGATGATCAATCATCTTCATGGCACTAAAGTACTTGTTGTACTCGATGATGTGACCACATTTGAACACTTGAAAGCGCTATGTGCAAATCCTATATTGTTTGGTCCAGGAAGTGTATTCATTGTTACAACTAGAGATACACGCCTGCTTAAGCTAGTTAATGCGGACTATGTCTGCACAATGAAGGAAATGGACGAAAATGAGTCCCTTGAGCTCTTCAGCTGGCATGCTTTTAGACAGCCCATTCCAAAGAATAAATTCAGTAAAATCTCGAGGAAAGTAGTTGCTTATTGCAGAGGATTACCATTGGCTCTTGAAATCATTGGTTCTTCTTTATATGGGCGGCCAAAAGAAGAATGGAAAAATATGCTCTTTAATATGAACAAAATTCCCACTCCTGAGGTAAGCACATATCCCATGTTAGAGAAATACTAG 1305 0.3916 MDSPSHSSLSSHSRRLMHDVFISFNREDTSKTFVYDLDDALFKVGIHCYIDFHEGTDLDSEVLEAIEDARVSIIVFSKSYTESSRCLNELEKVMDCRGTGQFVVPVFYDVNPSVVRHQKGDFGQVLRDTAEQVCFRSGGEEKINNVLSIWSTALTQAANLSGWHVNNYRYQDKQVRLIVEDVIRMIVIESWFISSFPVRLESYVQQVTDFIENQSSQVCLIGICGMGGSGKTTTAKSIYNKIRGNFINRSFIRNVRQVCEENKGIIRLQRQLLSDITNTNVMINSIASGEMMINHLHGTKVLVVLDDVTTFEHLKALCANPILFGPGSVFIVTTRDTRLLKLVNADYVCTMKEMDENESLELFSWHAFRQPIPKNKFSKISRKVVAYCRGLPLALEIIGSSLYGRPKEEWKNMLFNMNKIPTPEVSTYPMLEKY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01546 434 PRINTS Disease resistance protein signature 295 309 - -
Vifa4g01546 434 PRINTS Disease resistance protein signature 220 235 - -
Vifa4g01546 434 PRINTS Disease resistance protein signature 388 402 - -
Vifa4g01546 434 SMART till_3 17 160 IPR000157 GO:0007165
Vifa4g01546 434 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 163 IPR035897 -
Vifa4g01546 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 425 IPR027417 -
Vifa4g01546 434 ProSiteProfiles TIR domain profile. 16 186 IPR000157 GO:0007165
Vifa4g01546 434 Pfam NB-ARC domain 202 419 IPR002182 GO:0043531
Vifa4g01546 434 Pfam TIR domain 18 132 IPR000157 GO:0007165
Vifa4g01546 434 Gene3D - 353 431 IPR042197 -
Vifa4g01546 434 Gene3D - 192 348 IPR027417 -
Vifa4g01546 434 Gene3D - 11 190 IPR035897 -
Vifa4g01546 434 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 419 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01546 Vifa-Chr4 452663734 452665208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01546 202 408 WRKY Transcription Factor Family AT5G45050 29.187 3.18e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01546 - - psat:127076556 604.749