LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g01545	ATGCCTTCTTCATCCTCCTCCTCCACCCCTCAATTCCTCTACGACGTCTTCCTCAACTTCAGAGGCGAAGATGTTCGTCGTAGCTTCGTTTCTCAACTCTACAAGTCCCTCTCAGATGCCAGAATCAACACTTTTCTCGACGACGAGAAGCTTGAAAAGGGAACGGATCTGGAACCAGAGCTAATGCGAGCAATTGAAGCTTCTCGTATTTACATAGTGGTTTTCACCAAAGCTTACATCACATCTAGTTGGTGTCTTAAAGAACTTGTTCACATCATGAACTGCCGCAAAACTACTGGACAAATGGTTCTGCCTATATTTTACCACGTTGAAGCGTCCGAGGTGCGTCATCAGAAGGATGGTTTTAGAAAAGCTTTGCATTCAACTGCAAAAAGAAGAACCTCTGGAGGTCAAAGAATGGAACATATGTTATCCAAGTGGACCAATGCACTAACCGAAGCTGCAACTATAATTGGATGGGATTTCAAAAATTTCAGGAATGAAGTTGAGTTAATTTCTGAAATAGTTAAAGATGTTTCGAGAAAGCTAAAAAGCAGATCATTGAAAATTACCGAATTTCCAGTTGGATTGGATAGCCGTGTGCAACAAATGATTCAGTTTATTGAAAATCATTCAACCAAGGTTTGCTTGATAGGGATCTGGGGTATGGCTGGCTCTGGTAAAACAACAACAGCCAGAGATATCTACAACAAATTTAATGACAAATTTTTAGATCACTGTTTCATTGGAGATATTAGAGAAGTCTGTGAAAGAGGTGTTGGAGGTGAAAGAGGTGTTTCATTGCAGATCACTGTTTTACAAGAACAACTTCTTTCAAGTGTCTCGAAAACAAATGAAAAGATACATAGCACTCTAGACGGGATAGCCACAATTGAGAACAGATTTATGGGAAAAAAGGCACTTGTTGTACTCGATGATGTGAGCACTTTGGAGCAAGTAAAAGCCCTATGCGGAAACAGTAAATGTTTTGGTTCGGGAAGTGTATTGATTGTTACATCCAGGGATTTGCATATACTTAAGTTACTTGAAACCGACCGTATCTATAGTATAAAGGAAATGGACCAAGGCAAGTCCCTTGAGCTTTTCTGTTGGCATGCTTTCAGAAAAGCCAGTCCTATAGAAGACTTCCGTCAGCTCTCAAATGACGTAGTTGCTTACTGTGGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTAACTTGCGTGACAGGCCAGAACAACACTGGAAATATGTACTATCACAATTAGAGAGAATTCCAAATGATAAAGTACAGGACAAACTCCAAATAAGCTATGAAGGTTTAGAGGATGATCTTCAAAAGGATATATTTCTTGACATTTGTTGTTTCTTTATTGGGAAGGACAGGGCCCATGTTTCAGAGATTCTAGATGGCCTTGGACCTTATTCTGATGTTGGAATAACTGTCCTCATAGAGCGCAGCCTCCTAAAAGTCGAAAAGAATAACAAGCTTGGAATGCACGGTTTGCTACGAGACATGGGAAGAGAGATTGTTCGTAAAGAATCAAAGAAAGAGCCTGAGAAACGTAGTCGATTGTGGCTTCACAAGGATGCACATAAAGTATTGACAGATAATAGTGGAACAAAAACGGTGGAAGGATTGGTTATGAATTCCCAAAGCACCAGCAATGTTTGCTTCAAAACTGATACATTCAAGGAGATGAAGAATTTGAGACTTTTAAAACTTCATCATGTTGATCTTATCGGAGATTTTAAGCATCTTTCTCAAGAACTGAGATGGCTCCATTGGCAGGGATTTACTGGTGAATGTATACCCGGTGACTTTTATCCGAGAAATCTAGTTGCTTTTGAGTTTAAGCACAGCAATATTAAACAAGTTTGGAATGAAACAAAGTTGATGGAGAAGCTGAAAATTCTCAATCTGAGTCATTCCAAGTACTTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGACTGTCCAAGCTTGTCTATAGTACACCAGTCAATTGGGGATCTGGGGAATCTTCTTCTGATAAATTTTAAAGATTGTACAAGTCTTAGCAATCTCCCAGAGAAGATGAATCAATTGAAGTCTTTGAAATCTCTCATCCTTTCCGGTTGTTCAAAGATTGATAAGTTGGAGGAAAGCTTAGTGCAGATGGAATCCTTGACGACACTGGTCATAAAAGATACAGGTGTGAAAGAGGAGATGTATTCAGCAGTAAGATCAAAAAGCATCGGATATATATCTCTTTGTGGATATGAAGGACTATCATTTGATGTTTTTCCTTCTGTTATTTGGTCTTGGATGTCACCAACAATGGCTATGTCTTTAGCTTCCATCAATGTACAGAATAATAACTCGGGCTTTCTAACACCAATCGTTAGGAGCCTTTCACAACTCAGAACTGTTTGGATACAATGCAACTCAGAGATTCAACTAGCCCAAGAGTTACAAAGAATTCTACATGATATTAATCGTACAGATTTGGAAGACTCGCTAGTCTCAAATCATTCCTTGAAATCACATTTGATTGGAATGGGAAGTTGCCACACAGTCATGGATACTCTTTGCAAGCGCATACCACAGGAATTAACAACCAATGATTCAAGCAATTTTTTTGTTCCGGGTGGCAATTATCCTTCTTGGTTAGCCTATACAAGTGATGGTCCTTCAGCACCATTCCATATCCCTAAGGATATTGATTGCCCCATGGAGGGAATAGTCTTACGTGTTGTTTATTCATCAACATCTGAATCCATGGCAGTTGAATGTCTTACTAGCGTCATGATCATTAATTACACAAAGTGCACCATCCATATATACAAACGAGACACAGTTGTGTCCTTTATTGATGAAGATTGGAAGAATGTAACATCAAATCTAGAACCTGGTGATGAAGTCAAGATGTATGTGGTTCTTGGGCATGGATTGATTGTTAAGAAGACAACTGTTTTTCTAATATATGGCCAGTCAGTTATTATGGAAGTTGATTCATCGATTAAGATGGAATTGAATGTGCAGCCGCAGCCGTTACCTGAAGTGGACATGCAAGCATCATCTAATGTGACAGTACCAAAGGCCAATAAAAGTTTATTTTCAGGATTTGGAAAAAGAATGAGTGCATGCTTATGCTTGAATCAGCAGAGATAA	3180	0.3912	MPSSSSSSTPQFLYDVFLNFRGEDVRRSFVSQLYKSLSDARINTFLDDEKLEKGTDLEPELMRAIEASRIYIVVFTKAYITSSWCLKELVHIMNCRKTTGQMVLPIFYHVEASEVRHQKDGFRKALHSTAKRRTSGGQRMEHMLSKWTNALTEAATIIGWDFKNFRNEVELISEIVKDVSRKLKSRSLKITEFPVGLDSRVQQMIQFIENHSTKVCLIGIWGMAGSGKTTTARDIYNKFNDKFLDHCFIGDIREVCERGVGGERGVSLQITVLQEQLLSSVSKTNEKIHSTLDGIATIENRFMGKKALVVLDDVSTLEQVKALCGNSKCFGSGSVLIVTSRDLHILKLLETDRIYSIKEMDQGKSLELFCWHAFRKASPIEDFRQLSNDVVAYCGGLPLALEVIGSNLRDRPEQHWKYVLSQLERIPNDKVQDKLQISYEGLEDDLQKDIFLDICCFFIGKDRAHVSEILDGLGPYSDVGITVLIERSLLKVEKNNKLGMHGLLRDMGREIVRKESKKEPEKRSRLWLHKDAHKVLTDNSGTKTVEGLVMNSQSTSNVCFKTDTFKEMKNLRLLKLHHVDLIGDFKHLSQELRWLHWQGFTGECIPGDFYPRNLVAFEFKHSNIKQVWNETKLMEKLKILNLSHSKYLTSTPDFSKLPNLEKLIMKDCPSLSIVHQSIGDLGNLLLINFKDCTSLSNLPEKMNQLKSLKSLILSGCSKIDKLEESLVQMESLTTLVIKDTGVKEEMYSAVRSKSIGYISLCGYEGLSFDVFPSVIWSWMSPTMAMSLASINVQNNNSGFLTPIVRSLSQLRTVWIQCNSEIQLAQELQRILHDINRTDLEDSLVSNHSLKSHLIGMGSCHTVMDTLCKRIPQELTTNDSSNFFVPGGNYPSWLAYTSDGPSAPFHIPKDIDCPMEGIVLRVVYSSTSESMAVECLTSVMIINYTKCTIHIYKRDTVVSFIDEDWKNVTSNLEPGDEVKMYVVLGHGLIVKKTTVFLIYGQSVIMEVDSSIKMELNVQPQPLPEVDMQASSNVTVPKANKSLFSGFGKRMSACLCLNQQR	1059

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g01545	1059	SMART	till_3	13	157	IPR000157	GO:0007165
	Vifa4g01545	1059	Pfam	NB-ARC domain	200	434	IPR002182	GO:0043531
	Vifa4g01545	1059	SUPERFAMILY	"Winged helix" DNA-binding domain	429	536	IPR036390	-
	Vifa4g01545	1059	Gene3D	Ribonuclease Inhibitor	531	877	IPR032675	-
	Vifa4g01545	1059	Gene3D	-	360	443	IPR042197	-
	Vifa4g01545	1059	Gene3D	-	13	186	IPR035897	-
	Vifa4g01545	1059	SUPERFAMILY	L domain-like	558	839	-	-
	Vifa4g01545	1059	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	749	IPR044974	GO:0006952
	Vifa4g01545	1059	FunFam	Disease resistance protein (TIR-NBS-LRR class)	361	443	-	-
	Vifa4g01545	1059	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	185	-	-
	Vifa4g01545	1059	ProSiteProfiles	TIR domain profile.	12	183	IPR000157	GO:0007165
	Vifa4g01545	1059	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	160	IPR035897	-
	Vifa4g01545	1059	Pfam	TIR domain	14	187	IPR000157	GO:0007165
	Vifa4g01545	1059	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	454	IPR027417	-
	Vifa4g01545	1059	PRINTS	Disease resistance protein signature	703	719	-	-
	Vifa4g01545	1059	PRINTS	Disease resistance protein signature	394	408	-	-
	Vifa4g01545	1059	PRINTS	Disease resistance protein signature	217	232	-	-
	Vifa4g01545	1059	PRINTS	Disease resistance protein signature	301	315	-	-
	Vifa4g01545	1059	Gene3D	-	187	355	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g01545	Vifa-Chr4	452643473	452648188	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g01545	14	724	WRKY Transcription Factor Family	AT4G12020	31.284	4.84e-78	279

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g01545	-		-	mtr:11424959	1402.5