Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01536 ATGTCTTTCTCCTCCGATCATCCATGGATCTACGACGTGTTCATAAACTTCAGAGGAGAAGAAACTCGTCACAACATCGTTTCTCATCTCTATGTTGCACTCTCAAATGCGGGAATCAACACTTTTCTTGACAACAAGAATCTTACAAAGGGAGAGGAGCTAGGACCAGAACTGATGAGGGCAATAGAGGGCTCTAAGATTTCTATTGTTGTTTTATCGGTCAACTATACAAATTCTAGCTGGTGTCTTAACGAGCTGTTACATATCATGGAATGCCGCAAAAAGTATGGCCAGATCGTTTTACCCGTATTTTACGGTATTGACCCATCGTTTGTCCGTAAACAGAGTGGTTTCCTTGGAGAAGCCTTGACAGTTAGTGCAAGATGTGTTGAATGTTTTAATCCAAAACGAAAGAAAAGAGATCTCTTGTACAAGTGGAGGACCACACTCACAGAAGTTGCTAATATATCTGGCTGGGATTCCCGTAGTTTCAGTGAAGCTAAACTAGTGAAGAAAATTGTCGAGGACATTTTGACAAAACTAGATGTCTCATTGTTGTCTATTACTGAATTTCCGATTGGATTGGATTCCCATGTGCAAAAATTGACCCAAATGATTGACGCTCAATCAAGGAAAGCATGTATGATAGGGATATGGGGAATGGGTGGATCCGGCAAAACAACCATAGCTAAAGCTCTCTACAATCGAATCCATCGTAAATTTGAGGGTAGAGCAAGTTTCATTGAAAGTATACGAGAGAGTTGTGAAAGTGATACTAGAGGAATTATTCATTTACAACAACAACTTCTTTCAGATCTCCTCAAAATAAAGCAGGAGATTCATAGCATTGCATCCGGGATAACTAAGATCGAGACAAGACTTCGGGGGCAAAAGGCTTTTGTCATACTCGATGATGTGACCGAGTCGGAGCAATTAAAAGCTTTGTTTGGAAATCCTAAGTTGTTTGGTTCAGGAAGTGTATTGATTATTACAACTAGAGATGTACGCCTTCTCAATTCACTCAGTGCTGACCATGTCTTCACAATGACGGAAATGGACGACAACCAGTCTCTTGAACTTTTCAGCTGGCATGCTTTTCGACAACCAAGTCCTAGAGAAGATTTTAGTGAACTCTCTAGAAATGTAGTTGCTTATTGTGGAGGATTACCATTGGCTCTTGAAGTCCTTGGATCTTACTTATTTCAGAGGACGGAAAAGGAATGGAAAAGTGCTCTATCAAAATTAGAGAAAATTCCCAACAATCATGTGCTACAGAAATTGAGAATCAGTTATGATGGTCTAAAATATTATGAGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTCATTGGAAAAAACAGAGCTGATGTTACAGAGATACTTAATGGCTGTGGACTTTATGCTGATATTGGAATAGCTGTCCTCATAGAGCGCAGCCTCGTAAAAGTTGCAAAGAATAACAAGCTTCAAATGCATGATTTGCTAAGAGACATGGGTAGAGCAATAGTTGGCGAAAGTTCAGCAAAAGAGCCTGGAAAGCATAGTCGATTGTGGTTTCAAGAGGATGTGTTGCATGTTTTGTCAAATAATATTGGAACAGAAACTGTTGAAGGATTGATTTTGAAGTTGCATAGAACTGGCAGAATTTGCTTCAGTACTAATGCTTTTCAGGATATGAGAAAACTGAGGCTTTTAAAACTTGATGGTACTGACCTCAAAGGAGATTATGGATTAATTTCCAAACAATTGAGATGGGTTGATTGGCAACGATCTACCTTCAAATTTATACCCAATGACTTTGATATGGGAAATCTAGTTGTTTTGGAATTAAAATATAGCAGTGTTGAACAAGTTTGGCGGGAGACCAAGTTGTTGGAGAAGCTAAAAGTTCTTAATCTCAGTCATTCCAAGTACTTGAAAAGAACTCCGGACTTTTCAAAATTACCGAATTTAGAAAAGCTCATCATGAAGGATTGTCCAAGTTTGTCTGAGGTACACCAGTCCATTGGAGATCTCAAGAATCTTCTTTTGATAAATTTTAAGGACTGTACAAGTCTTTGTAATCTCCCAAGAGAGATCTATCAAATGATATCAGTGAAAACTCTCATCCTGTCCGGCTGTTCAAAGATTGACAAGTTGGAAGAAGACGTGGAGCAGATGGAATCCTTGACAACTCTAATTGCAGCAAATACTGGTATCAAGAAAATTCCTTTTTCAATAGTAAGATTAAAAAGTATTGGATATATATCACTATGTGAATATGAAGGATTATGGCATGATGTTTTTCCTTCTCTCATTTGGTCATGGATTTCACCAACCAGAGATTTCATTCCCCATGTTTTTCCATTTGGAGGCAACTCATTGTCTCATGTTTCATGGGATGTAGATAGTATTATGGACTATCATTCACCAATTCTTAGATGTGTTTGGGTTCAATGCCAGTCCGAAACTCAACTAACTCAAGAATTACAAAAGTTTGTCGATTATCTATATGATGTGAATTTTACTAAGTTGGAACACGGACCAAACACCTCAGATCATTCCTTGAGATCACTTGTGATTGGAATGGGAAATACCGAAATAATCATGGATACTCTTGGGAAGAGCTTATCACAGGGATTGGCCAGTTCTATTGATTCTTTTCTTCTGGGCAACAATTATCCTTCTTGGTTAGCCTATACATGTGAAGGATCTTCAGTAATTTTCCAAGTGCCTGAGGATAATGATTGCGGCATGAGTGGAATAAGCTTATGCGTTCTTTATTCATCAATGCCTGGAAACCTGATAACAGAATGTCTCACTAGTATCTTGATCATTAATTACACAAAATTAACTATCCAGATTTACAAGCGAGACACAGTAATGTCGTTTAACGATGAAGATTGGCAAGGTGTGGTATCAAATTTAGGAGTTGGTGACAAGGTGGAGATATTTGTAGCTATTGGGCATGGACTGACTGTTAAGGCGATGACTGTTTATCTAATATATCATCAGTCAACTGCAATGGAAATTAAGCCAATACCTGAAGTGGAGGTGCAGACATCACCTGATGTGAAAATGGATCCATTGCCTAAGAAAAATAGAAAAATATTTGTAAGACTTGCAATGAGAGTGGGAGAATGTTTATGTATGAACCAAAATTGA 3147 0.381 MSFSSDHPWIYDVFINFRGEETRHNIVSHLYVALSNAGINTFLDNKNLTKGEELGPELMRAIEGSKISIVVLSVNYTNSSWCLNELLHIMECRKKYGQIVLPVFYGIDPSFVRKQSGFLGEALTVSARCVECFNPKRKKRDLLYKWRTTLTEVANISGWDSRSFSEAKLVKKIVEDILTKLDVSLLSITEFPIGLDSHVQKLTQMIDAQSRKACMIGIWGMGGSGKTTIAKALYNRIHRKFEGRASFIESIRESCESDTRGIIHLQQQLLSDLLKIKQEIHSIASGITKIETRLRGQKAFVILDDVTESEQLKALFGNPKLFGSGSVLIITTRDVRLLNSLSADHVFTMTEMDDNQSLELFSWHAFRQPSPREDFSELSRNVVAYCGGLPLALEVLGSYLFQRTEKEWKSALSKLEKIPNNHVLQKLRISYDGLKYYEEKDIFLDICCFFIGKNRADVTEILNGCGLYADIGIAVLIERSLVKVAKNNKLQMHDLLRDMGRAIVGESSAKEPGKHSRLWFQEDVLHVLSNNIGTETVEGLILKLHRTGRICFSTNAFQDMRKLRLLKLDGTDLKGDYGLISKQLRWVDWQRSTFKFIPNDFDMGNLVVLELKYSSVEQVWRETKLLEKLKVLNLSHSKYLKRTPDFSKLPNLEKLIMKDCPSLSEVHQSIGDLKNLLLINFKDCTSLCNLPREIYQMISVKTLILSGCSKIDKLEEDVEQMESLTTLIAANTGIKKIPFSIVRLKSIGYISLCEYEGLWHDVFPSLIWSWISPTRDFIPHVFPFGGNSLSHVSWDVDSIMDYHSPILRCVWVQCQSETQLTQELQKFVDYLYDVNFTKLEHGPNTSDHSLRSLVIGMGNTEIIMDTLGKSLSQGLASSIDSFLLGNNYPSWLAYTCEGSSVIFQVPEDNDCGMSGISLCVLYSSMPGNLITECLTSILIINYTKLTIQIYKRDTVMSFNDEDWQGVVSNLGVGDKVEIFVAIGHGLTVKAMTVYLIYHQSTAMEIKPIPEVEVQTSPDVKMDPLPKKNRKIFVRLAMRVGECLCMNQN 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01536 1048 Pfam TIR domain 11 186 IPR000157 GO:0007165
Vifa4g01536 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 159 IPR035897 -
Vifa4g01536 1048 SUPERFAMILY L domain-like 541 765 - -
Vifa4g01536 1048 Gene3D - 8 184 IPR035897 -
Vifa4g01536 1048 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 183 - -
Vifa4g01536 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Vifa4g01536 1048 SMART till_3 10 156 IPR000157 GO:0007165
Vifa4g01536 1048 PRINTS Disease resistance protein signature 215 230 - -
Vifa4g01536 1048 PRINTS Disease resistance protein signature 386 400 - -
Vifa4g01536 1048 PRINTS Disease resistance protein signature 293 307 - -
Vifa4g01536 1048 PRINTS Disease resistance protein signature 624 640 - -
Vifa4g01536 1048 Gene3D - 185 349 IPR027417 -
Vifa4g01536 1048 SUPERFAMILY "Winged helix" DNA-binding domain 423 528 IPR036390 -
Vifa4g01536 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 735 IPR044974 GO:0006952
Vifa4g01536 1048 Gene3D - 351 435 IPR042197 -
Vifa4g01536 1048 Gene3D Ribonuclease Inhibitor 526 861 IPR032675 -
Vifa4g01536 1048 ProSiteProfiles TIR domain profile. 9 181 IPR000157 GO:0007165
Vifa4g01536 1048 Pfam NB-ARC domain 197 419 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01536 Vifa-Chr4 451244562 451248818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01536 11 744 WRKY Transcription Factor Family AT4G12020 29.216 1.22e-75 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01536 - - tpra:123923859 1398.65