Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01534 ATGTATTCATCTTCCTCCTCCTCCTCCTCCTCAAACCCCCGATGGATTCACGACGTCTTCATCAACTTCAGAGGCGAAGACACTCGCAGAACCTTCGTCTCCCATCTCTACGCCGTCCTCTCAAACGCCGGAATCAACACTTTCCTCGACAACGAGAAGCTCGAAAAAGGCGAGGACATTCGAAACGAACTAGTTCAATCGATTGGAGTATCGCGCATATCAATCGTCGTTTTCTCCAAAGGCTACACCGAATCTAGTTGGTGTTTAAACGAATTGGATAAGATCATGGAGTGTCGTAGAACTCTAGGTCAAGTCGTTTTGCCTGTGTTTTATGATGTTGAGCCTTCTGTTGTTCGCCATCAGAAAGGGGAGTTTGGTAAAGCTTTGGAAGTTAGTGCTAAGAGTCGATATATAATTGAGGAAGTGATGCAGAAGGTTTTGACTAGATGGAAAAAGGTCTTGACTGACGCTTCCTATTTATCTGGTTGGGAAGGAAGCGCTTTCAGTGACCGTGAATTAGTAAAGAAAATTGTTGATGCCATTTTGCCAAAACTAGACAACACATCCTTGCCGATTACTGACTTTCCAGTTGGATTAGAGTTCCATGTGAAACAAGTGGTTCAGTTGATTAAGAAACAACCGAGCGATGTTTGTATGGTAGGGATCTGGGGCATGGGAGGATCGGGTAAAACAACTGTAGCCAAAGCCATATACAATCAAATTCATCGTACATTTGATTGTATAAGTTTCATTGAGAATATTAGAGAAGTTTGTGAACACGATAGTAGAGGGCACATTCATTTACAACAACAACTTCTTTCGGATGTCCTTAAAACAAAGGAGAAGATACATAGTATTGCGTCGGGGACAACTAGGATCCAAAAAGTGCTTTCCGGAAAAAAATCACTTGTTGTACTTGATGATGTGACAGATTTTCAGCAAATAAAAGCCCTGTGTGGAAATCATAAAAGTTTTGGTTCTGGAAGTGTATTAATTGTTACAACCAGGGATGTCCACATACTTAAGTTACTTAAAGTTTCTGTCTATGAAATGAAGGAAATGCACAAAAATGAGTCTCTTGAGCTTTTTTGTTGGCATGCTTTTAGACTAGCAAGTCCGAGAGGAGGCTATAGTGAACTCTCAAGAAATGTGGTTGCTTATTGTGGAGGGTTACCGCTGGCTCTTGAAGTCCTTGGATCCTACTTATTTGAGAGGTCAAAACAAGAATGGATAAGTGTACTATCAAAGTTAGAGAGAATTCCCAATGATCAAGTGCATGAGAAACTGAGAATAAGCTACGATGGTTTGAAGGATGACATGGAAAAGGATATATTTCTCGACATATGTTGTTTCTTTATCGGTAAGGACAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAGCTGTCCTCATTGATCGGAGTCTCCTAAAAGTTGAGAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTCCGCGGAATTTCTGCTAGAGAGCCTGGGAAGCGTAGTCGGTTGTGGTTTCACGAAGATGTACACGATGTTTTGGAAAAAAATACTGGAACAGAAACTGTTGAGGCATTGATTTTGAACTTGCAAAGAACAGGAAGAGTTAGCTACAGTACCAATGCTTTTCAAGACATGCAGAAACTGAGACTTTTACAACTTGATCGTGTTGACCTCACTGGAGATTTTGGTAATTTTTCCAAACAACTGAGATGGGTCAATTGGCAACGACCTGCCTTCAACTTTGTACCCAACGGCTTTGATCAGGGAAATCTCGTTGTTTTTGAATTAAAACATAGCAATGTTAACCAAGTTTGGAAGGAAGCCAAGTTGTTGCAGAAGCTAAAAGTTCTCAATCTCAGTCATTCTAGACACTTGAAAAGCACCCCTGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAGGATTGTCAAAGTTTATCCAACGTACACCCGTCCATTGGAGATCTCAAGAATCTCCTTCTCATAAACTTGAAGGACTGTACAAGTCTTGGCTATCTTCCAAAAGAGATCTATCAATTGAGATCTGTAATAACTCTCATCTTTTCTGGTTGCTCAAAGATTAACAAATTGGAAGAAGATATAGGGCAAATGGAATCCTTGACAACTCTAATTGCAGCAAATACTGGTGTCAAACAAGTTCCCCATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGTTTATCGCGTGATATTTTTCCTGCTATCATTTGGTCTTTGACGTCACCAACGATGAATTCCTTGGCACATATTCCCCCTTTCGGTGGCATGTCAATGTCTCTTGTTTCCTTGGATATAGATGGTAAAAATTTTGGTTTGGTCAATCAATCAGCAATTCTTAGCAGCAGCTCAGAACTTAGAAGAATTTGTGTACAATGTCACTCAGAGATTCAACTGAAAGAAGAATTAAGAAGATTTCTGTATGATCTTACTGAGTTGGAAACATCACATACTTCACAAACCTCGGATCTTTTCTTTAAATCTGTTTTGTTTGGAATGGGAAGTTGCCAAATAATGAATGAGACTCTTGGCAAGAGCTTATCGCAGGGATTGACAACCAATAAGTCTAGTGCTTCTTTCCTTCCGAGAAACAATTTACCCGCTCGGTTAGTATATACATCTGAAGGACCTTCAATATACAAGAGAGACACAATAATGTCCTTTAATGATGAAGATTGGAAGGGTGTACTATCAAATTTAGGAGTTGGTGAAGATGTAGAGATTTATGTAGCTTTTGGGCATGGATTGACAGTTAAGGAGACTACTGTCTATCTAATATATGGTGAGTCAACTGTCATGGAAAATGAGCCATCAATTACTGTGGAAGTTGAACCAATACCTGAAGTGGAGGTGCAACCGTCACCTGATGTGAGAACAGAGCCATCACCTGGAGTGGAAGCACAACGATCGCCTGATGTGAAGATGGAGTCACCACTTACTGTCAAGAATGAGCCATTACCGAAGCCAAATGAAAAATTCTTCGTAAGACTTGCAAAGAGAGTGGGCGGATGTTTATGCTTGAACCATAATTGA 3129 0.3985 MYSSSSSSSSSNPRWIHDVFINFRGEDTRRTFVSHLYAVLSNAGINTFLDNEKLEKGEDIRNELVQSIGVSRISIVVFSKGYTESSWCLNELDKIMECRRTLGQVVLPVFYDVEPSVVRHQKGEFGKALEVSAKSRYIIEEVMQKVLTRWKKVLTDASYLSGWEGSAFSDRELVKKIVDAILPKLDNTSLPITDFPVGLEFHVKQVVQLIKKQPSDVCMVGIWGMGGSGKTTVAKAIYNQIHRTFDCISFIENIREVCEHDSRGHIHLQQQLLSDVLKTKEKIHSIASGTTRIQKVLSGKKSLVVLDDVTDFQQIKALCGNHKSFGSGSVLIVTTRDVHILKLLKVSVYEMKEMHKNESLELFCWHAFRLASPRGGYSELSRNVVAYCGGLPLALEVLGSYLFERSKQEWISVLSKLERIPNDQVHEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGIAVLIDRSLLKVEKNNKLGMHDLIRDMGREIVRGISAREPGKRSRLWFHEDVHDVLEKNTGTETVEALILNLQRTGRVSYSTNAFQDMQKLRLLQLDRVDLTGDFGNFSKQLRWVNWQRPAFNFVPNGFDQGNLVVFELKHSNVNQVWKEAKLLQKLKVLNLSHSRHLKSTPDFSKLPNLEKLIMKDCQSLSNVHPSIGDLKNLLLINLKDCTSLGYLPKEIYQLRSVITLIFSGCSKINKLEEDIGQMESLTTLIAANTGVKQVPHSIVRSKSIGYISLCGYEGLSRDIFPAIIWSLTSPTMNSLAHIPPFGGMSMSLVSLDIDGKNFGLVNQSAILSSSSELRRICVQCHSEIQLKEELRRFLYDLTELETSHTSQTSDLFFKSVLFGMGSCQIMNETLGKSLSQGLTTNKSSASFLPRNNLPARLVYTSEGPSIYKRDTIMSFNDEDWKGVLSNLGVGEDVEIYVAFGHGLTVKETTVYLIYGESTVMENEPSITVEVEPIPEVEVQPSPDVRTEPSPGVEAQRSPDVKMESPLTVKNEPLPKPNEKFFVRLAKRVGGCLCLNHN 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01534 1042 Gene3D Ribonuclease Inhibitor 539 873 IPR032675 -
Vifa4g01534 1042 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 751 IPR044974 GO:0006952
Vifa4g01534 1042 Pfam TIR domain 17 189 IPR000157 GO:0007165
Vifa4g01534 1042 Pfam NB-ARC domain 202 423 IPR002182 GO:0043531
Vifa4g01534 1042 Gene3D - 353 437 IPR042197 -
Vifa4g01534 1042 ProSiteProfiles TIR domain profile. 15 185 IPR000157 GO:0007165
Vifa4g01534 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Vifa4g01534 1042 Gene3D - 9 183 IPR035897 -
Vifa4g01534 1042 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 187 - -
Vifa4g01534 1042 PRINTS Disease resistance protein signature 296 310 - -
Vifa4g01534 1042 PRINTS Disease resistance protein signature 626 642 - -
Vifa4g01534 1042 PRINTS Disease resistance protein signature 388 402 - -
Vifa4g01534 1042 PRINTS Disease resistance protein signature 219 234 - -
Vifa4g01534 1042 MobiDBLite consensus disorder prediction 983 1014 - -
Vifa4g01534 1042 Gene3D - 184 350 IPR027417 -
Vifa4g01534 1042 SUPERFAMILY L domain-like 494 853 - -
Vifa4g01534 1042 SMART till_3 16 160 IPR000157 GO:0007165
Vifa4g01534 1042 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01534 Vifa-Chr4 451034259 451040135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01534 17 743 WRKY Transcription Factor Family AT4G12020 29.506 4.49e-78 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01534 - - tpra:123923836 1323.53