Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01533 ATGTATTCATCTTCCTCCTCCTCCTCCTCCTCAAACCCCCGATGGATTCACGACGTCTTCATCAACTTCAGAGGCGAAGACACTCGCAGAACCTTCGTCTCCCATCTCTACGCCGTCCTCTCAAACGCCGGAATCAACACTTTCCTCGACAACGAGAAGCTCGAAAAAGGCGAGGACATTCGAAACGAACTAGTTCAATCGATTGGAGTATCGCGCATATCAATCGTCGTTTTCTCCAAAGGCTACACCGAATCTAGTTGGTGTTTAAACGAATTGGATAAGATCATGGAGTGTCGTAGAACTCTAGGTCAAGTCGTTTTGCCTGTGTTTTATGATGTTGAGCCTTCTGTTGTTCGCCATCAGAAAGGGGAGTTTGGTAAAGCTTTGGAAGTTAGTGCTAAGAGTCGATATATAATTGAGGAAGTGATGCAGAAGGTTTTGACTAGATGGAAAAAGGTCTTGACTGACGCTTCCTATTTATCTGGTTGGGAAGGAAGCGCTTTCAGGAGTGACCGTGAATTAGTAAAGAAAATTGTTGATGCCATTTTGCCAAAACTAGACAACACATCCTTGCCGATTACTGACTTTCCAGTTGGATTAGAGTTCCATGTGAAACAAGTGGTTCAGTTGATTAAGAAACAACCGAGCGATGTTTGTATGGTAGGGATCTGGGGCATGGGAGGATCGGGTAAAACAACTGTAGCCAAAGCCATATACAATCAAATTCATCGTACATTTGATTGTATAAGTTTCATTGAGAATATTAGAGAAGTTTGTGAACACGATAGTAGAGGGCACATTCATTTACAACAACAACTTCTTTCGGATGTCCTTAAAACAAAGGAGAAGATACATAGTATTGCGTCGGGGACAACTAGGATCCAAAAAGTGCTTTCCGGAAAAAAATCACTTGTTGTACTTGATGATGTGACAGATTTTCAGCAAATAAAAGCCCTGTGTGGAAATCATAAAAGTTTTGGTTCTGGAAGTGTATTAATTGTTACAACCAGGGATGTCCACATACTTAAGTTACTTAAAGTTTCTGTCTATGAAATGAAGGAAATGCACAAAAATGAGTCTCTTGAGCTTTTTTGTTGGCATGCTTTTAGACTAGCAAGTCCGAGAGGAGGCTATAGTGAACTCTCAAGAAATGTGGTTGCTTATTGTGGAGGGTTACCGCTGGCTCTTGAAGTCCTTGGATCCTACTTATTTGAGAGGTCAAAACAAGAATGGATAAGTGTACTATCAAAGTTAGAGAGAATTCCCAATGATCAAGTGCATGAGAAACTGAGAATAAGCTACGATGGTTTGAAGGATGACATGGAAAAGGATATATTTCTCGACATATGTTGTTTCTTTATCGGTAAGGACAGAGCCTATGTTACAGAGATACTAAATGGCTGTGGACTTTATGCTGATATTGGAATAGCTGTCCTCATTGATCGGAGTCTCCTAAAAGTTGAGAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTCCGCGGAATTTCTGCTAGAGAGCCTGGGAAGCGTAGTCGGTTGTGGTTTCACGAAGATGTACACGATGTTTTGGAAAAAAATACTGGAACAGAAACTGTTGAGGCATTGATTTTGAACTTGCAAAGAACAGGAAGAGTTAGCTACAGTACCAATGCTTTTCAAGACATGCAGAAACTGAGACTTTTACAACTTGATCGTGTTGACCTCACTGGAGATTTTGGTAATTTTTCCAAACAACTGAGATGGGTCAATTGGCAACGACCTGCCTTCAACTTTGTACCCAACGGCTTTGATCAGGGAAATCTCGTTGTTTTTGAATTAAAACATAGCAATGTTAACCAAGTTTGGAAGGAAGCCAAGTTGTTGCAGAAGCTAAAAGTTCTCAATCTCAGTCATTCTAGACACTTGAAAAGCACCCCTGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAGGATTGTCAAAGTTTATCCAACGTACACCCGTCCATTGGAGATCTCAAGAATCTCCTTCTCATAAACTTGAAGGACTGTACAAGTCTTGGCTATCTTCCAAAAGAGATCTATCAATTGAGATCTGTAATAACTCTCATCTTTTCTGGTTGCTCAAAGATTAACAAATTGGAAGAAGATATAGGGCAAATGGAATCCTTGACAACTCTAATTGCAGCAAATACTGGTGTCAAACAAGTTCCCCATTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGTTTATCGCGTGATATTTTTCCTGCTATCATTTGGTCTTTGACGTCACCAACGATGAATTCCTTGGCACATATTCCCCCTTTCGGTGGCATGTCAATGTCTCTTGTTTCCTTGGATATAGATGGTAAAAATTTTGGTTTGGTCAATCAATCAGCAATTCTTAGCAGCAGCTCAGAACTTAGAAGAATTTGTGTACAATGTCACTCAGAGATTCAACTGAAAGAAGAATTAAGAAGATTTCTGTATGATCTTACTGAGTTGGAAACATCACATACTTCACAAACCTCGGATCTTTTCTTTAAATCTGTTTTGTTTGGAATGGGAAGTTGCCAAATAATGAATGAGACTCTTGGCAAGAGCTTATCGCAGGGATTGACAACCAATAAGTCTAGTGCTTCTTTCCTTCCGAGAAACAATTTACCCGCTCGGTTAGTATATACATCTGAAGGACCTTCAATATACAAGAGAGACACAATAATGTCCTTTAATGATGAAGATTGGAAGGGTGTACTATCAAATTTAGGAGTTGGTGAAGATGTAGAGATTTATGTAGCTTTTGGGCATGGATTGACAGTTAAGGAGACTACTGTCTATCTAATATATGGTGAGTCAACTGTCATGGAAAATGAGCCATCAATTACTGTGGAAGTTGAACCAATACCTGAAGTGGAGGTGCAACCGTCACCTGATGTGAGAACAGAGCCATCACCTGGAGTGGAAGCACAACGATCGCCTGATGTGAAGATGGAGTCACCACTTACTGTCAAGAATGAGCCATTACCGAAGCCAAATGAAAAATTCTTCGTAAGACTTGCAAAGAGAGTGGGCGGATGTTTATGCTTGAACCATAATTGA 3132 0.3988 MYSSSSSSSSSNPRWIHDVFINFRGEDTRRTFVSHLYAVLSNAGINTFLDNEKLEKGEDIRNELVQSIGVSRISIVVFSKGYTESSWCLNELDKIMECRRTLGQVVLPVFYDVEPSVVRHQKGEFGKALEVSAKSRYIIEEVMQKVLTRWKKVLTDASYLSGWEGSAFRSDRELVKKIVDAILPKLDNTSLPITDFPVGLEFHVKQVVQLIKKQPSDVCMVGIWGMGGSGKTTVAKAIYNQIHRTFDCISFIENIREVCEHDSRGHIHLQQQLLSDVLKTKEKIHSIASGTTRIQKVLSGKKSLVVLDDVTDFQQIKALCGNHKSFGSGSVLIVTTRDVHILKLLKVSVYEMKEMHKNESLELFCWHAFRLASPRGGYSELSRNVVAYCGGLPLALEVLGSYLFERSKQEWISVLSKLERIPNDQVHEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGIAVLIDRSLLKVEKNNKLGMHDLIRDMGREIVRGISAREPGKRSRLWFHEDVHDVLEKNTGTETVEALILNLQRTGRVSYSTNAFQDMQKLRLLQLDRVDLTGDFGNFSKQLRWVNWQRPAFNFVPNGFDQGNLVVFELKHSNVNQVWKEAKLLQKLKVLNLSHSRHLKSTPDFSKLPNLEKLIMKDCQSLSNVHPSIGDLKNLLLINLKDCTSLGYLPKEIYQLRSVITLIFSGCSKINKLEEDIGQMESLTTLIAANTGVKQVPHSIVRSKSIGYISLCGYEGLSRDIFPAIIWSLTSPTMNSLAHIPPFGGMSMSLVSLDIDGKNFGLVNQSAILSSSSELRRICVQCHSEIQLKEELRRFLYDLTELETSHTSQTSDLFFKSVLFGMGSCQIMNETLGKSLSQGLTTNKSSASFLPRNNLPARLVYTSEGPSIYKRDTIMSFNDEDWKGVLSNLGVGEDVEIYVAFGHGLTVKETTVYLIYGESTVMENEPSITVEVEPIPEVEVQPSPDVRTEPSPGVEAQRSPDVKMESPLTVKNEPLPKPNEKFFVRLAKRVGGCLCLNHN 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01533 1043 Pfam NB-ARC domain 203 424 IPR002182 GO:0043531
Vifa4g01533 1043 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 188 - -
Vifa4g01533 1043 ProSiteProfiles TIR domain profile. 15 186 IPR000157 GO:0007165
Vifa4g01533 1043 Gene3D - 186 351 IPR027417 -
Vifa4g01533 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 449 IPR027417 -
Vifa4g01533 1043 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 750 IPR044974 GO:0006952
Vifa4g01533 1043 PRINTS Disease resistance protein signature 297 311 - -
Vifa4g01533 1043 PRINTS Disease resistance protein signature 627 643 - -
Vifa4g01533 1043 PRINTS Disease resistance protein signature 220 235 - -
Vifa4g01533 1043 PRINTS Disease resistance protein signature 389 403 - -
Vifa4g01533 1043 MobiDBLite consensus disorder prediction 984 1015 - -
Vifa4g01533 1043 Gene3D - 354 438 IPR042197 -
Vifa4g01533 1043 SUPERFAMILY L domain-like 495 854 - -
Vifa4g01533 1043 Gene3D Ribonuclease Inhibitor 540 874 IPR032675 -
Vifa4g01533 1043 Pfam TIR domain 17 190 IPR000157 GO:0007165
Vifa4g01533 1043 Gene3D - 9 185 IPR035897 -
Vifa4g01533 1043 SMART till_3 16 160 IPR000157 GO:0007165
Vifa4g01533 1043 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01533 Vifa-Chr4 451034259 451040135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01533 17 744 WRKY Transcription Factor Family AT4G12020 29.467 3.28e-77 276