Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01527 ATGGAAAACCAGTTCTTTTTGAATGCTGGATTCGAACCGTCACTTCATTCTTCAAATTCTCCAATGCCAACTTGGCAATCACTTTCTTCATCCATGGAAGTTCAACCGTCACTTGTGAATTCTTCCTTAAACCAATCCCAAGATTGTTTTTTCAACCCGAATTGGGATAAGTCAACGGCTCAAAATCTTAACTTTGATTCAGCATTTAGCTCAATTGTCTCATCTCCTGCATCACCACCAATTGAGAATCTTGTGATGAGAGAATTGATAGGAAAGTTGGGTAGTTTTGGTGAGATCTCCCAACAACATTCTAAGCTCAACAACGTTGTACCAATAATGAACCATTTAGGAGGAAAACCAATGCCTGAATTTTCACCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAGAGTTTCAATGAGAGAAGTAACCAATTGGTGATGATGAACAATGTGGAGTTAGCTCAAAGACCTGTTATTTTAACGGAAAATGGAGCCAAGTTACTACCAAGAGTTTCGAGTAGTCCTTCATTCAAAACAATTGGATCTCAAATGGTTAACACAGAGAACAAGAATTCCCCATTGCAACAAGAATATGAAGGAATTGAAGTAGGTAATTCTCAAGAAGAATCTACAATCTCTGAGCAAAATACTCCAAATGGTGGTGAAATTGGTGTGAAAGCTTCACTTGATATGAACTCAAGGAAAAGAAAAAGTTCTTCTTTTAAAGCAAAAGCTTCAAACTCTTCCAATCCTGCCAAGGGTGATGAAGACTTAAATGCAAAGAAAAGCAAGTCAAATGAGGGTGAGAAAAATGAAAATGATGGCATGAATATAGAGGAAGATTCCAAAAAGATTGCTACTAATTCAGAGGATGAGAAACAGAACAAGAGTAACTCAAAAGCTCCTGAACCTCAAAAAGACTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCCGAACGTGTTAGGAGGGAGAAAATAAGCGAAAGAATGAAACTTCTTCAAGATCTCGTGCCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTACAACGTCAAGTAGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGTATTGAAAGTGGTGTTGTATCAAAAGATATATTTCAATCAAATAATTCATTGCAAAACTCAATATTCCAATTAGACTCATCAGCAGCACCATCTTTTTATGGGACACAAACCCAACAAAATCAAGTTATTCATAGTAACATTCCTAATGGAAGTGGGACACATTGCTTAGTGGATTCATTGGATTCTTCTTTATGCCATAATCTTGGCATGCATTTACCTTCACTAAATGGATTTAATGAAAATGGATCTCAGTTTCCATTAACATTTTCTGAGGAGGACTTAAACACCATTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGGAAACACCAATAAACTCACCTAGTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAACTCTAA 1566 0.3659 MENQFFLNAGFEPSLHSSNSPMPTWQSLSSSMEVQPSLVNSSLNQSQDCFFNPNWDKSTAQNLNFDSAFSSIVSSPASPPIENLVMRELIGKLGSFGEISQQHSKLNNVVPIMNHLGGKPMPEFSPDPGFVQRAAKFSCFGSKSFNERSNQLVMMNNVELAQRPVILTENGAKLLPRVSSSPSFKTIGSQMVNTENKNSPLQQEYEGIEVGNSQEESTISEQNTPNGGEIGVKASLDMNSRKRKSSSFKAKASNSSNPAKGDEDLNAKKSKSNEGEKNENDGMNIEEDSKKIATNSEDEKQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTSIESGVVSKDIFQSNNSLQNSIFQLDSSAAPSFYGTQTQQNQVIHSNIPNGSGTHCLVDSLDSSLCHNLGMHLPSLNGFNENGSQFPLTFSEEDLNTIVQMGFGQTSNRETPINSPSFNGSNQATQMKIEL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01527 521 MobiDBLite consensus disorder prediction 496 515 - -
Vifa4g01527 521 MobiDBLite consensus disorder prediction 211 229 - -
Vifa4g01527 521 FunFam Basic helix-loop-helix transcription factor 321 393 - -
Vifa4g01527 521 Pfam Helix-loop-helix DNA-binding domain 328 375 IPR011598 GO:0046983
Vifa4g01527 521 CDD bHLH_AtBPE_like 314 398 - -
Vifa4g01527 521 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 212 431 IPR024097 GO:0006355
Vifa4g01527 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 390 IPR036638 GO:0046983
Vifa4g01527 521 SMART finulus 330 380 IPR011598 GO:0046983
Vifa4g01527 521 MobiDBLite consensus disorder prediction 211 332 - -
Vifa4g01527 521 Gene3D - 321 397 IPR036638 GO:0046983
Vifa4g01527 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 374 IPR011598 GO:0046983
Vifa4g01527 521 MobiDBLite consensus disorder prediction 262 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01527 Vifa-Chr4 449349978 449352802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01527 1 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.495 1.62e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01527 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01527 - - gmx:100801233 556.984