Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01519 ATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGAGACTGGAGGAAAGAAGAAGGCATGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAAGCTGCTCACACAAAGCTTTCAAGCAACAAAACCATCAGGAGAATTCGTGTCAGAGGTGGAAATGTCAAGTGGAGAGCTTTGAGGTTGGATACTGGTAACTTTTCCTGGCCAAGTGAAACTGTCACCCGCAAAACCCGTCTACTTGATGTGGTTTACAATGCCTCCAACAATGAGTTGGTGCGTACTCAGACCCTTGTGAAGAGTGCCATTGTCCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGATATTGGAAGGAAAAAGAAAACTGCTGGCAAGAAAGACTCTGAGGAGGCTGAAGCTGTTACTGAAGAAATTAAAAAGAGCAGCCATGTTCAGAGGAAATTAGAACAGCGCCAAAAGGATCGCCAATTGGATCCACATATTGAAGAACAATTTGGTGGCGGAAGGCTGCTTGCATGCATTTCTTCCCGCCCTGGACAATGTGGCAGGGCTGATGGCTACATTTTGGAAGGTAGAGAGTTGGAATTTTACATGAAGAAGCTCCAGAAGAAGAAGGGAAAGGGTGCTTCAGCTTGA 654 0.4602 MGISRDSMHKRRETGGKKKAWRKKRKYELGRQAAHTKLSSNKTIRRIRVRGGNVKWRALRLDTGNFSWPSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAGKKDSEEAEAVTEEIKKSSHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGRELEFYMKKLQKKKGKGASA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01519 217 FunFam 40S ribosomal protein S8 32 159 - -
Vifa4g01519 217 MobiDBLite consensus disorder prediction 1 26 - -
Vifa4g01519 217 FunFam 40S ribosomal protein S8 160 213 - -
Vifa4g01519 217 Gene3D Ribosomal protein S8e, subdomain 108 174 IPR042563 -
Vifa4g01519 217 MobiDBLite consensus disorder prediction 141 165 - -
Vifa4g01519 217 CDD Ribosomal_S8e_like 5 195 - -
Vifa4g01519 217 PANTHER 40S RIBOSOMAL PROTEIN S8 1 213 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vifa4g01519 217 NCBIfam ribosomal protein eS8 1 197 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vifa4g01519 217 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vifa4g01519 217 Gene3D - 26 211 - -
Vifa4g01519 217 FunFam 40S ribosomal protein S8 109 174 - -
Vifa4g01519 217 Pfam Ribosomal protein S8e 5 195 IPR022309 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01519 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.927 1.42e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01519 K02995 - gmx:100500112 363.999