Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01518 ATGGATGAAGATTTCGATATCCCGGCGGTTGACCAGATGAACGACGACGATTTCGACTTCGCCGGCGCCGGCAATAATCCTATTCTCAAGGTCGGCGAAGAGAAGGAAATCGGTAAGCAGGGGCTGAAGAAGAAGCTCCTCAAAGAAGGTGAAGGATGGGACACTCCCGAAGTTGGCGATGAAGTTCACGTTCATTATACTGGGACGTTGCTTGATGGTACTAAGTTTGATTCTAGTAGAGATAGAGGAACTCCTTTCAACTTCACTCTTGGACAAGGGCAAGTCATCAAAGGATGGGATGATGGTATTATAACCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCAGCTGAGTTGGCTTATGGGGAGTCTGGTTCTCCTCCAACTATTCCTCCCAATGCTACTCTACAGTTTGATGTTGAGCTGCTGTCTTGGACTAGTGTGAAAGATATATGTAAAGATGGAGGATTGTTTAAGAAGGTTCTTAAGGAGGGGGAGAAATGGGAAAACCCTAAGGATCTTGATGATGTCTTTGTTAAGTATGAAGCACATCTTGAGGATGGAACACTTGTAGGAAAATCTGATGGAGTGGAGTTCACTGTGAAGGAGGGTCATTTTTGTCCTGCGTTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGGAAGTGATTTTGACTGTGAAGCCACAGTATGGATTTGGTGAGAAGGGCAAGCCAGCTCAGGGTGGTGAGGTTGCAGTTCCACCTAATGCAACATTGCAAATTACACTTGAGCTAGTTTCTTGGAAGACTGTTTCTGAAGTAACCGATGACAAGAAGGTCATCAAAAAGATCGTCAAGGAAGGAGAAGGATATGAACGTCCAAATGAGGGAGCTGTTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGCACTGTATTTGTTAAGAAGGGTCATGGTGATGATGAAGCCGAGTTGTTTGAATTCAAAACAGATGATGAGCAAGTGATTGATGGGCTTGATAGAGCTGTAATAACCATGAAGAAGGGTGAGGTAGCATTGTTGACCATTGCACCTGAGTATGCTTTTGGTTCAACTGAGACTAAGCAGGAATTGGCAGTGGTTCCTCCTAATTCAACCTTGCATTATGAGGTTGAGCTAGTATCATTCGTAAAGGATAAGGAGTCCTGGGACATGAACACTGAAGAGAAGATACAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCTTTGTTCAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTGTAAAGTACATAGAGTACGATACTGCTTTTGGCGAAGAGGAGAAGAAAAGTGCCAAGGCCTTGAAGGTTGCTTGTAATTTGAACGATGCAGCATGCAAGTTGAAGTTGAAAGATTATAAACAAGCAGAGAAATTGTGTACAAAGGTGCTGGAGCTTGAGAGCACAAATGTGAAAGCTCTTTATAGAAGGGCTCAGGCATATATTCAGTTGACTGACTTGGATCTGGCTGAACTTGATATCAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAGACTTTGAAGGAAAAGGTGAAGGAGATCAACAAGAAAGATGCAAAATTTTATGGGAATATGTTCAGCAAAATGAAAAAATTGGATTCTCTTGACAGTAATAATTCGGCACCAAAGGATGCTGAACCTATGAGTGTTGACAGCAAGGCATAA 1731 0.4263 MDEDFDIPAVDQMNDDDFDFAGAGNNPILKVGEEKEIGKQGLKKKLLKEGEGWDTPEVGDEVHVHYTGTLLDGTKFDSSRDRGTPFNFTLGQGQVIKGWDDGIITMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKVLKEGEKWENPKDLDDVFVKYEAHLEDGTLVGKSDGVEFTVKEGHFCPALSKAVKTMKKGEEVILTVKPQYGFGEKGKPAQGGEVAVPPNATLQITLELVSWKTVSEVTDDKKVIKKIVKEGEGYERPNEGAVVKLKLIGKLQDGTVFVKKGHGDDEAELFEFKTDDEQVIDGLDRAVITMKKGEVALLTIAPEYAFGSTETKQELAVVPPNSTLHYEVELVSFVKDKESWDMNTEEKIQAAGKKKEEGNALFKAGKYARASKRYEKAVKYIEYDTAFGEEEKKSAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLTDLDLAELDIKKALEIDPNNRDVKLEYKTLKEKVKEINKKDAKFYGNMFSKMKKLDSLDSNNSAPKDAEPMSVDSKA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01518 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 383 IPR001179 GO:0003755
Vifa4g01518 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 55 144 IPR001179 GO:0003755
Vifa4g01518 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755
Vifa4g01518 576 SUPERFAMILY FKBP-like 150 267 - -
Vifa4g01518 576 FunFam Peptidylprolyl isomerase 391 546 - -
Vifa4g01518 576 Coils Coil 519 539 - -
Vifa4g01518 576 FunFam Peptidylprolyl isomerase 265 388 - -
Vifa4g01518 576 FunFam Peptidylprolyl isomerase 32 150 - -
Vifa4g01518 576 PANTHER PEPTIDYLPROLYL ISOMERASE 34 147 - -
Vifa4g01518 576 MobiDBLite consensus disorder prediction 555 576 - -
Vifa4g01518 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755
Vifa4g01518 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 386 IPR001179 GO:0003755
Vifa4g01518 576 SUPERFAMILY FKBP-like 36 151 - -
Vifa4g01518 576 Gene3D - 150 264 IPR046357 GO:0003755
Vifa4g01518 576 Gene3D Tetratricopeptide repeat domain 389 546 IPR011990 GO:0005515
Vifa4g01518 576 SMART tpr_5 452 485 IPR019734 GO:0005515
Vifa4g01518 576 SMART tpr_5 486 519 IPR019734 GO:0005515
Vifa4g01518 576 SMART tpr_5 403 436 IPR019734 GO:0005515
Vifa4g01518 576 SUPERFAMILY TPR-like 391 551 IPR011990 GO:0005515
Vifa4g01518 576 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Vifa4g01518 576 SUPERFAMILY FKBP-like 269 402 - -
Vifa4g01518 576 Gene3D - 31 149 IPR046357 GO:0003755
Vifa4g01518 576 FunFam Peptidylprolyl isomerase 151 264 - -
Vifa4g01518 576 Gene3D - 265 388 IPR046357 GO:0003755
Vifa4g01518 576 Pfam Tetratricopeptide repeat 487 519 IPR013105 -
Vifa4g01518 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01518 Vifa-Chr4 448560309 448563784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01518 1 560 Calmodulin-binding Proteins AT3G25230 80.714 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01518 K09571 - gmx:100803189 976.081