Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01510 ATGGAAAGGTATAAAATTTTGAAAGAGCTTGGACATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGAGAACTTTTGAGATTGTTGCTGTCAAAAGGTTGAAAAGAAAATTTTGTTTTTGGGAAGAATACACAAATTTAAGAGAAGTCAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAGAGAAGTTGTTAAAGAAAATAATGAACTCTTTTTAATTTTTGAATACATGGATTGTAATCTCTATCAATTAATAAAAGAGAAAGAAAAACCCTTTTCAGAGGAAGAGATACGATGTTTGATGAAGCAAGTGCTCCAAGGACTCAGTCACGTGCACAAAAAAGGATTCTTTCATCGGGATTTAAAACCTGAAAATCTGCTGGTGTCAAATGATGTTCTTAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTACAGAGCTCCTGAAGTTTTGTTGCAGTCCACATGCTATACTCCTGCTGTTGACATGTGGGCTATTGGTGCTATATTAGCTGAGCTTTTTACTCTGACCCCCATATTTCCCGGTGAAAGTGAAATAGATCAACTGTACAAAATATACTGCATTCTTGGTATGCCAGATTCAACTTGTTTCACCATAGGTGCAAACAACTCTAGGCTATTGGACTTTGTAGGCCATGAAGTTGTTCCACCTATGAAGCTTTCTGATATCATTCCAAATGCTAGCATGGAAGCTATTGATTTGATCACACAATTGTTATCGTGGGACCCATCTAGAAGACCAGATGCGGATCGGTCACTGCAACATCCTTTTTTCCATGTGCATACAAGGGTTCCTTGTTCACTCGGTGATCCACTTGAGCTGAAGCTGAGTAACAAGAGGGCAAAGCCAAACCTTGAGTTGAAATTGTATGATTTTGGCCCTGATCCCGATGATTGTTTTCTTGGCTTGACTTTGGCTGTAAAGCCCAGCGTTTCAAACTTAGATGTGGTTCAAAATGCATCGCGCGGGATGGGAGAGAATATGCTATTTTGCTCGAATTTTAATGATCATCAAGATCAATCAGTTTTTTGGTCATTATTATCTCCTGATCAGAATGGAGTTCACAACTCAGCAGAGACTTCATTATCATTGTCATTTGGATCTGTTCAACACCAGCCAATGGGAGTTCCACAAACAGCGGGGTTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCTTTTTTGACACCTTCTTCTCCGTTCCAGCGCCGCCGACATTGCCTTTGA 1311 0.3966 MERYKILKELGHGSCGHVYKARDMRTFEIVAVKRLKRKFCFWEEYTNLREVKALRKMNHPNIIKLREVVKENNELFLIFEYMDCNLYQLIKEKEKPFSEEEIRCLMKQVLQGLSHVHKKGFFHRDLKPENLLVSNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSTCYTPAVDMWAIGAILAELFTLTPIFPGESEIDQLYKIYCILGMPDSTCFTIGANNSRLLDFVGHEVVPPMKLSDIIPNASMEAIDLITQLLSWDPSRRPDADRSLQHPFFHVHTRVPCSLGDPLELKLSNKRAKPNLELKLYDFGPDPDDCFLGLTLAVKPSVSNLDVVQNASRGMGENMLFCSNFNDHQDQSVFWSLLSPDQNGVHNSAETSLSLSFGSVQHQPMGVPQTAGFSFQPLQPNILTTPFLTPSSPFQRRRHCL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01510 436 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 310 - -
Vifa4g01510 436 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01510 436 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Vifa4g01510 436 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Vifa4g01510 436 CDD STKc_MAK_like 4 284 - -
Vifa4g01510 436 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01510 436 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Vifa4g01510 436 Gene3D Transferase(Phosphotransferase) domain 1 82 284 - -
Vifa4g01510 436 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01510 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vifa4g01510 436 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01510 Vifa-Chr4 446531919 446546722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01510 1 310 Core Cell Cycle Gene Families AT1G66750 37.771 7.57e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vifa4g01510 Pkinase 9.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01510 K08829 K08830 gmx:100792842 780.4