Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01488 ATGTCTTTCTCCTCCGATCATCCATGGATCTACGACGTGTTCATAAACTTCAGAGGAGAAGAAACTCGTCACAACATCGTTTCTCATCTCTATGTTGCACTCTCAAATGCGGGAATCAACACTTTTCTTGACAACAAGAATCTTACAAAGGGAGAGGAGCTAGGACCAGAACTGATGAGGGCAATAGAGGGCTCTAAGATTTCTATTGTTGTTTTATCAGTCAACTATACAAATTCTAGCTGGTGTCTTAACGAGCTGTTACATATCATGGAATGCCGCAAAAAGTATGGCCAGATCGTTTTACCCGTATTTTACGGAAGTGTATTGATTATTACAACTAGAGATGTACGCCTTCTCAATTCACTCAGTGCTGACCATGTCTTCACAATGACGGAAATGGACGACAACCAGTCTCTTGAACTTTTCAGCTGGCATGCTTTTCGACAACCAAGTCCTAGAGAAGATTTTAGTGAACTCTCTAGAAATGTAGTTGCTTATTGTGGAGGATTACCATTGGCTCTTGAAGTCCTTGGATCTTACTTATTTGAGAGGACGGAAAAGGAATGGAAAAGTGCTCTATCAAAATTAGAGAAAATTCCCAACAATCATGTGCTACAGAAATTGAGAATCAGTTATGATGGTCTAAAAGATTATAAGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTCATTGGAAAAAACAGAGCTGATGTTACAGAGATACTTAATGGCTGTGGACTTCATGCTGATATTGGAATAGCTGTCCTCATAGAGCGCAGCCTCGTAAAAGTTGCAAAGAATAACAAGCTTCAAATGCATGATTTGCTAAGAGACATGGGTAGAGCAATAGTTGGCGAAAGTTCAGCAAAAGAGCCTGCAAAGCATAGTCGATTGTGGTTTCAAGAGGATGTGTTGGATGTTTTGTCAAAAAATATTGGAACAGAAACTGTTGAAGGATTGATTTTGAAGTTGCATAGAACTGGCAGAATTTGCTTCAGTACTAATGCTTTTCAGGAGATGAAAAAACTGAGGCTTTTAAAACTTGATGGTACTGACCTCAAAGGAGATTATGGATTAATTTCCAAACAATTGAGATGGGTTGATTGGCAACGATCTACCTTCAAATTTATACCCAATGGCTTTGATATGGGAAATCTAGTTGTTTTGGAATTAAAATATAGCAGTGTTGAACAAGTTTGGCGGGAGACCAAGTTGTTGGAGAAGCTAAAAGTTCTTAATCTCAGTCATTCCAAGTACTTGAAAAGAACTCCGGACTTTTCAAAATTACCGAATTTAGAAAAGCTCATCATGAAGGATTGTCCAAGTTTGTCTGAGTTGGAAGAAGACGTGGGGCAGATGGAATCCTTGACAACTCTAATTGCAGCAAATACTGGTATCAAGAAAATTCCTTTTTCAATAGTAAGATTAAAAAGTATTGGATATATATCACTATGTGAATATGAAGGATTATGGCATGATGTTTTTCCTTCTCTCATTTGGTCATGGATTTCACCAACCAGAGATTTCATTCCCCATGTTTTTCCATTTGGAGGCAACTCATTGTCTCATGTTTCATGGGATGTAGATAGTATTATGGACTATCATTCACCAATTCTTAGATGTGTTTGGGTTCAATGCCAGTCCGAAACTCAACTAACTCAAGAATTACAAAAGTTTGTCGATTATCTATATGATGTGAATTTTACTAAGTTGGAACACGGACCAAACACCTCAGATCATTCCTTGAGATCACTTGTGATTGGAATGGGAAATACCGAAATAATCATGGATACTCTTGGGAAGAGCTTATCACAGGGATTGGCAGCCAGTTCTATTGATTCTTTTCTTCCGGGCGACAATTATCCTTCTTGGTTAGCCTATACATGTGAAGGATCTTCAGTAATTTTCCAAGTGCCTGAGGATAATGATTGCGGCATGAGTGGAATAAGCTTATGCGCTCTTTATTCATCAATGCCTGGAAACCTGATAACAGAATGTCTCACTAGTATCTTGATCATTAATTACACAAAATTAACTATCCAGATTTACAAGCGAGACACAGTAATGTCATTTAACGATGAAGATTGGCAAGGTGTGGTATCAAATTTAGGAGTTGGTGACAAGGTTGAGATATTTGTAGCTATTGGGCATGGATTGACTGTTAAGGGATGA 2175 0.3798 MSFSSDHPWIYDVFINFRGEETRHNIVSHLYVALSNAGINTFLDNKNLTKGEELGPELMRAIEGSKISIVVLSVNYTNSSWCLNELLHIMECRKKYGQIVLPVFYGSVLIITTRDVRLLNSLSADHVFTMTEMDDNQSLELFSWHAFRQPSPREDFSELSRNVVAYCGGLPLALEVLGSYLFERTEKEWKSALSKLEKIPNNHVLQKLRISYDGLKDYKEKDIFLDICCFFIGKNRADVTEILNGCGLHADIGIAVLIERSLVKVAKNNKLQMHDLLRDMGRAIVGESSAKEPAKHSRLWFQEDVLDVLSKNIGTETVEGLILKLHRTGRICFSTNAFQEMKKLRLLKLDGTDLKGDYGLISKQLRWVDWQRSTFKFIPNGFDMGNLVVLELKYSSVEQVWRETKLLEKLKVLNLSHSKYLKRTPDFSKLPNLEKLIMKDCPSLSELEEDVGQMESLTTLIAANTGIKKIPFSIVRLKSIGYISLCEYEGLWHDVFPSLIWSWISPTRDFIPHVFPFGGNSLSHVSWDVDSIMDYHSPILRCVWVQCQSETQLTQELQKFVDYLYDVNFTKLEHGPNTSDHSLRSLVIGMGNTEIIMDTLGKSLSQGLAASSIDSFLPGDNYPSWLAYTCEGSSVIFQVPEDNDCGMSGISLCALYSSMPGNLITECLTSILIINYTKLTIQIYKRDTVMSFNDEDWQGVVSNLGVGDKVEIFVAIGHGLTVKG 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01488 724 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 117 IPR035897 -
Vifa4g01488 724 ProSiteProfiles TIR domain profile. 9 126 IPR000157 GO:0007165
Vifa4g01488 724 SUPERFAMILY L domain-like 322 499 - -
Vifa4g01488 724 FunFam Disease resistance protein (TIR-NBS-LRR class) 134 216 - -
Vifa4g01488 724 SMART till_3 10 199 IPR000157 GO:0007165
Vifa4g01488 724 Pfam NB-ARC domain 100 200 IPR002182 GO:0043531
Vifa4g01488 724 Gene3D - 137 216 IPR042197 -
Vifa4g01488 724 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 106 IPR044974 GO:0006952
Vifa4g01488 724 Pfam TIR domain 11 108 IPR000157 GO:0007165
Vifa4g01488 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 227 IPR027417 -
Vifa4g01488 724 SUPERFAMILY "Winged helix" DNA-binding domain 204 309 IPR036390 -
Vifa4g01488 724 Gene3D - 1 136 IPR035897 -
Vifa4g01488 724 Gene3D Ribonuclease Inhibitor 290 503 IPR032675 -
Vifa4g01488 724 PRINTS Disease resistance protein signature 167 181 - -
Vifa4g01488 724 PRINTS Disease resistance protein signature 405 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01488 Vifa-Chr4 438623122 438628446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01488 107 476 WRKY Transcription Factor Family AT5G45050 29.904 1.12e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01488 - - tpra:123923859 822.002