Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01480 ATGGCCATTACAAAAGTGAATGAAAAGTTACTTGAAGACCTTCAAGTTATGGGATTTCCACAAGCAAGGGCAACAAGAGCACTCTACTATTCTGGAAATACAAGCTTAGAGGATGCTATAACTTGGATGATTGATCATGAAAATGACACTGATATTGATGAGTTTCCATTGGTAGATGTAGACATTGATATTGATACATCATCATCATCGTTTCCTATCACAGAAGAAATGAGAATGAAAGCTCATAGTTTAAGAGAACAAGAGAGAAAGAGGAAAAGGAATGATGAACAAATAATCGAAAGAGAAAGGGAAAAGGAGAGGATTCAAGCAGGTAAGAAACTCCTTGAGGCAAAGCGAATCGCGGAAGAAAATGAAAGAAAACGGAATTTAGCTTTGAGAAAAGCAGAAAAAGAAGAAGAACAAAGAGCTAGGGGTAACATTCTCAAGAAACTAGATCAAGATAAGCTAAATAGAAGATCTGAACATGGATTACCTTTAGAAAGCCAAGAAAATGCGAGATCAACAGCAATTGTAATAAAGCATGACAAGATTTCAAGGCCTGTTTATACAACTACAAAAGTTGAGCATTTAAGAGAATGTTTGAGGTCTCTCAAGCGTGAACACAAGGGTGAGAATGCAAGAATCAGAAGGGGGTTTGAAACACTTCTAGTGTATGTTGGAAATGTTGTCAAGAATCCAAAGGAAGAAAAATTCAGGAAGATTAGACTGAGTAATCCATTATTCCAGGATAGAGTTGGAAGTTTAGATGGAGGTGTAGAGTTTCTTGAGCTATGTGGTTTTGAGAGAAGAGATGAGCTCTTGTATCTTCCTAGTGAAAAGATTGACATGGGACTACTAAGTTCAGCTGGTTTTGTCTTGAATTCTGCTATCACTAATCCTTTCTTTGGACTTTTGAGTACTTAA 924 0.3669 MAITKVNEKLLEDLQVMGFPQARATRALYYSGNTSLEDAITWMIDHENDTDIDEFPLVDVDIDIDTSSSSFPITEEMRMKAHSLREQERKRKRNDEQIIEREREKERIQAGKKLLEAKRIAEENERKRNLALRKAEKEEEQRARGNILKKLDQDKLNRRSEHGLPLESQENARSTAIVIKHDKISRPVYTTTKVEHLRECLRSLKREHKGENARIRRGFETLLVYVGNVVKNPKEEKFRKIRLSNPLFQDRVGSLDGGVEFLELCGFERRDELLYLPSEKIDMGLLSSAGFVLNSAITNPFFGLLST 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01480 307 Pfam UBA/TS-N domain 7 42 IPR015940 -
Vifa4g01480 307 Gene3D - 8 53 - -
Vifa4g01480 307 Pfam PUB domain 215 281 IPR018997 -
Vifa4g01480 307 SUPERFAMILY PUG domain-like 191 301 IPR036339 -
Vifa4g01480 307 Coils Coil 120 141 - -
Vifa4g01480 307 PANTHER F13M7.16 PROTEIN 1 305 - -
Vifa4g01480 307 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Vifa4g01480 307 Coils Coil 84 105 - -
Vifa4g01480 307 Gene3D - 193 295 - -
Vifa4g01480 307 MobiDBLite consensus disorder prediction 78 98 - -
Vifa4g01480 307 SUPERFAMILY UBA-like 6 56 IPR009060 GO:0005515
Vifa4g01480 307 SMART PGNneu 217 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01480 Vifa-Chr4 436114378 436116049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01480 1 305 C2H2 Transcription Factor Family AT1G04850 54.693 2.35e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01480 - K24348 gmx:100781260 442.58