Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01469 ATGGCTTTTCCATCTCATAACAAAACTCACTTCTTGTTCATAACATTCCTCACATTTTGCACCTTTTTTTCATGCTATACTTCAATCACTGACACCCTTACATCATCCAAATACCTCGAAGACCAAGAAACAATAACCTCAGACAGCACAAACTTCATACTAGGTTTCTTCAGTCCTTTAAACTCAACAAACCGTTACCTAGGAATCTGGTACATCAATCAAACAAACACAATATGGATTGGTAACAGAGACCAACCGGTTAAAGATTCAAACGGAATCGTCACAATTCAAAAAGATGGTAATCTTGTGATACTAGACAAACCAAAGGGCATAACCATTTGGTCAACAAATATTTCATCATCCGCAAAAAGCATCAATTCAAGTGCTCAGCTTAATGATGCAGGAAACTTGATTCTAAGAGATGTGAATTCTGGATTAACGATTTGGGACAGTTTCACTCACCCTGCAGATGCTGCTGTTCCATCTATGAGAATTGCGGCTAATAAAGTAACAGGTGAGAAGATTTCTTTCGTTGCAAGAAAAAGCGAGAACGATCCTTCTTCGGGTCGTTTTTCTATTAGTCTTGAAAGATTGGATGCACCAGAGGTTTTTATTTGGCATGATAAAAAGATTTATTGGAGAACTGGTCCTTGGAACGGAAGGATTTTTCTGGGATCGCCGAGGATGTCGACCGAGTATTTATTCGGTTGGCTATTAAATCCGAACGATAACGGAACTGCCTATATAACTTACAATTTCGCGGATAAGAATATGTTTGGGATTCTTTCGTTGACACCGCACGGAACACTTAAGTTGGTTGAGTATTCGGATAAAAAAGAAGTTCTTCATCTCGAGGTTGATCAAAATGAGTGTGATTTTTATGGAAAGTGTGGGCCAAATGGGAATTGTGATAACTCAACAACGCCAATTTGTCAGTGTTTTGAAGGGTTTGAACCAAAGAATCCGGTGGAATGGAGTTCAGGAAATTGGACTAATGGTTGTGTGAGGCAAGAAGGATTGAACTTGAAGTGTGAGATTGTGAAGAATGGATCAAGTTTGGTTAAACAAGATGGATTTTTGTTGAAACATAATATGAAAGTTCCCGATTTTAATGACAGATCAGCTGTTGTTAGTCAAGATCAATGTGGAGCAGATTGTTTAGCAAATTGTTCTTGTGTGGCATATGCATATGATCCATATATATTTTGTATGCATTGGAGTAAAGAGTTGATTGATTTGCAAGCATTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTCCCGGCGGAACTAGTTCCAGTAAACAAAAAGAAAAAAGGGAACAAGAAGGGTGTCTTAATCATTGCCATTGCTGTAGGGATAGGAGCATTTACCTTTGTTATATGTGGTTATCTTTTGTGGAGAAAATGTTCTCCTAGGCATAAAGGAAGATATCCTAGAAACTCACTTGTTAGAGAACATAAACAAATGAAGTTGGATGAGTTACCACTATATGAGTTTGAAAAGCTTGAAACTGCTACAAGAAACTTTCACTTTGGTAACATGCTTGGGAAGGGAGGTTTTGGCCCTGTATATAAGGGAGTAATGGATGATGGTCAAGAAATTGCGGTGAAAAGGCTTTCGAAAGCGTCTGGACAAGGAATGGAAGAGTTCATGAATGAAGTTGGAGTGATTTCTAAGCTTCAACATCGCAATCTTGTAAGGCTTCTTGGTTGTTGTGTTGAAAGGGGTGAGCAAATGTTGGTTTATGAGCTCATGCCAAATAAGAGTTTGGATGCATTTCTCTTTGATCCACTACAAAAGAAAAACTTAGATTGGAAAAAGAGATCATACATAATTGAAGGAATAGCTAGAGGCATACTCTATCTTCACAGAGACTCAAGACTAAGGATTATACATAGAGATTTAAAAGCAAGCAACATTTTACTTGATGGCGACATGATTCCAAAAATATCAGACTTTGGTTTAGCAAAAATCGTTAAGGGTGGAGAAGATGATGAAGCTAATACAAAAAGAGTCATGGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCCGAGAAATCAGACGTTTATAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGCGGACGGAGAAATAGTAGCTTTTATCATAGCGAGGATTCTCTTAGCCTTGTTGGCTTTGCGTGGAAACTATGGTTAGAAGAAAACATTATATCTCTAATAGATCCTGAGGTATGGGATACATGTTTTGAGAGCAGCATGTTGAGGTGCATACACATAGGACTTTTATGTGTGCAAGAAGTTCCAAAAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCGACTCCTGGAAAAGTTGCATATGTTCATAAGCAAAATTCTAGAAGTACAGAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAATAATGTAACTATGACTGATGTTGAAGGAAGATAA 2490 0.3767 MAFPSHNKTHFLFITFLTFCTFFSCYTSITDTLTSSKYLEDQETITSDSTNFILGFFSPLNSTNRYLGIWYINQTNTIWIGNRDQPVKDSNGIVTIQKDGNLVILDKPKGITIWSTNISSSAKSINSSAQLNDAGNLILRDVNSGLTIWDSFTHPADAAVPSMRIAANKVTGEKISFVARKSENDPSSGRFSISLERLDAPEVFIWHDKKIYWRTGPWNGRIFLGSPRMSTEYLFGWLLNPNDNGTAYITYNFADKNMFGILSLTPHGTLKLVEYSDKKEVLHLEVDQNECDFYGKCGPNGNCDNSTTPICQCFEGFEPKNPVEWSSGNWTNGCVRQEGLNLKCEIVKNGSSLVKQDGFLLKHNMKVPDFNDRSAVVSQDQCGADCLANCSCVAYAYDPYIFCMHWSKELIDLQAFPYGGVDLFIRVPAELVPVNKKKKGNKKGVLIIAIAVGIGAFTFVICGYLLWRKCSPRHKGRYPRNSLVREHKQMKLDELPLYEFEKLETATRNFHFGNMLGKGGFGPVYKGVMDDGQEIAVKRLSKASGQGMEEFMNEVGVISKLQHRNLVRLLGCCVERGEQMLVYELMPNKSLDAFLFDPLQKKNLDWKKRSYIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLAKIVKGGEDDEANTKRVMGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYHSEDSLSLVGFAWKLWLEENIISLIDPEVWDTCFESSMLRCIHIGLLCVQEVPKERPNISTVVLMLISEITHLPTPGKVAYVHKQNSRSTESSQKSHQSNSNNNVTMTDVEGR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01469 829 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Vifa4g01469 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 152 - -
Vifa4g01469 829 Gene3D Transferase(Phosphotransferase) domain 1 586 791 - -
Vifa4g01469 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 790 - -
Vifa4g01469 829 PIRSF SRK 3 829 IPR024171 GO:0004674
Vifa4g01469 829 ProSiteProfiles PAN/Apple domain profile. 344 428 IPR003609 -
Vifa4g01469 829 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Vifa4g01469 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vifa4g01469 829 SMART blect_4 36 155 IPR001480 -
Vifa4g01469 829 SMART ntp_6 354 427 IPR003609 -
Vifa4g01469 829 CDD PAN_AP_plant 356 428 - -
Vifa4g01469 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 220 IPR036426 -
Vifa4g01469 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 773 - -
Vifa4g01469 829 Pfam PAN-like domain 355 413 IPR003609 -
Vifa4g01469 829 Pfam Protein tyrosine and serine/threonine kinase 511 779 IPR001245 GO:0004672|GO:0006468
Vifa4g01469 829 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vifa4g01469 829 SMART serkin_6 510 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01469 829 Gene3D - 24 154 IPR036426 -
Vifa4g01469 829 CDD B_lectin 36 155 IPR001480 -
Vifa4g01469 829 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Vifa4g01469 829 SUPERFAMILY Protein kinase-like (PK-like) 495 815 IPR011009 -
Vifa4g01469 829 MobiDBLite consensus disorder prediction 798 829 - -
Vifa4g01469 829 CDD STKc_IRAK 516 782 - -
Vifa4g01469 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 585 - -
Vifa4g01469 829 Pfam D-mannose binding lectin 77 181 IPR001480 -
Vifa4g01469 829 ProSiteProfiles Protein kinase domain profile. 510 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01469 Vifa-Chr4 433464642 433467857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01469 433 792 Receptor kinase-like Gene Family AT4G23190 51.923 7.39e-121 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g01469 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01469 - - gmx:100786846 1140.56