Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01465 ATGGAAAATCGTCAAAGAATTACACTCTACGATCAAATAACATCTTCCAGTAACACAAGCAACACTCCAAGCTCACTTGCAACGTTAATCCAAAACGACGCCGTTTTCGCCATTCAAAAAACCCGAAACCAAACTCTCTTAGACATTATACGACAAAACGAACCCAACAACGTTGTTGATAACAGCAACACTACAAAAGATCGAAAATCGTGGAAGGCTTTTAAGGAATTAGTACTCCGTCTAAAGCGTCGTAACCCGGACGAGTCAACTCAACAAGAACAACAACAACAGCAACAACAAAACGAGGTTGTTCGAGAAGATCTGAACGGTTCGGATCCGGTGGAATTGCTCGCCGGCGGTGAGTTTTCCGACGAGGAAATTAACGTGAATACATCGGAGACGGTGCAGGTTAGTATGTCGTTGATGGATTTGTTAGAAGAGAGTGAAATTGATTTGGATCGAATCGGTGATGACGTGGATGAGAAACGACGAGAAGAAGAAGAGGAAAGAGAAGGAGAAGGGAATGTTTCGGTGGAACGCAATTGCTGCGTGTGTATGGTGAGGCATAAAGGTGCAGCGTTTATACCGTGTGGACACACGTTTTGCAGGATGTGTTCAAGAGAGCTTTGGGTGAGTAGAGGAAATTGTCCTCTTTGCAATAATTTGATTTTAGAAGTTCTTGATATTTTCTAG 693 0.4286 MENRQRITLYDQITSSSNTSNTPSSLATLIQNDAVFAIQKTRNQTLLDIIRQNEPNNVVDNSNTTKDRKSWKAFKELVLRLKRRNPDESTQQEQQQQQQQNEVVREDLNGSDPVELLAGGEFSDEEINVNTSETVQVSMSLMDLLEESEIDLDRIGDDVDEKRREEEEEREGEGNVSVERNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVSRGNCPLCNNLILEVLDIF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01465 230 Pfam Zinc finger, C3HC4 type (RING finger) 179 223 - -
Vifa4g01465 230 Coils Coil 145 165 - -
Vifa4g01465 230 PANTHER OS01G0917900 PROTEIN 90 230 - -
Vifa4g01465 230 CDD RING-HC 182 219 - -
Vifa4g01465 230 ProSiteProfiles Zinc finger RING-type profile. 182 220 IPR001841 -
Vifa4g01465 230 MobiDBLite consensus disorder prediction 90 106 - -
Vifa4g01465 230 SUPERFAMILY RING/U-box 181 226 - -
Vifa4g01465 230 SMART ring_2 182 219 IPR001841 -
Vifa4g01465 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 230 IPR013083 -
Vifa4g01465 230 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01465 Vifa-Chr4 432840649 432841341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01465 139 230 C3H Transcription Factor Family AT3G25030 61.957 3.24e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01465 - - cam:101511225 293.123