Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01448 ATGACACAGACATCAACAACAACTTCTTTAGAAACAGCCACAACCTCAAACTCTTCCACCTCTTCTTCTTCATCACCCTCACCACATTCAACTTACCATGGAGTAAGAAAACGCAGCTGGGGAAAATGGGTGTCAGAAATTCGAGAGCCTCGCAAAAAATCAAGAATCTGGCTCGGAACATTCTCAACGCCAGAAGCTGCAGCTAGGGCACACGACGTAGCAGCTTTAACAATCAAAGGCAAAACCGCTATTCTCAATTTCCCTCATTTTTCCAACATGCTCCCTATACCTGCCACGTCAGCACCACGTGATATTCAAGCTGCGGCAACAGCAGCGGCTGCTATGGTTGACTTTGATAAGCCTGTCGTGCATGTTACTGGCCAATGTTGTTCTGATGAATCTCAAGAAGATGAACTTAGTCAGATTGTTGAACTTCCAAAAATTAATGAAGAATGTGAAGATGATAGCTCTGCTTCTAAGTTTGTATTGTTTGACTCGGTTGATAGTGATTGCTTTTATCATCAAACTCCGACCAATGGCTCTGAAGGAATCGAATTCTATCCGACATTTTCTGATGATTTTTTCATCCCCATTTGGGATTGA 603 0.4279 MTQTSTTTSLETATTSNSSTSSSSSPSPHSTYHGVRKRSWGKWVSEIREPRKKSRIWLGTFSTPEAAARAHDVAALTIKGKTAILNFPHFSNMLPIPATSAPRDIQAAATAAAAMVDFDKPVVHVTGQCCSDESQEDELSQIVELPKINEECEDDSSASKFVLFDSVDSDCFYHQTPTNGSEGIEFYPTFSDDFFIPIWD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01448 200 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Vifa4g01448 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 152 - -
Vifa4g01448 200 MobiDBLite consensus disorder prediction 1 32 - -
Vifa4g01448 200 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Vifa4g01448 200 CDD AP2 32 89 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Vifa4g01448 200 MobiDBLite consensus disorder prediction 1 35 - -
Vifa4g01448 200 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01448 Vifa-Chr4 430356884 430357486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01448 2 173 AP2-EREBP Transcription Factor Family AT5G11590 43.386 3.03e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g01448 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01448 K09286 - gmx:100804056 194.897