Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01447 ATGACACAAACAACAACAACAACCTCTTCAGAAACAACCACCACGACAACAACCTCAAACTCCTCCACCTCTTCATCTTCTTCACCACTACCCTCACATTCAACTCAAAAACAAACCTCAACAAAGCCCAAAGACGACAAAAACAACAACAAACACCCAACCTACCATGGAGTAAGAAAACGCAGCTGGGGAAAATGGGTGTCAGAAATTCGAGAGCCTCGCAAAAAATCAAGAATCTGGCTCGGAACATTCTCAACGCCAGAAGCTGCAGCTAGAGCACACGATGTAGCAGCTTTAACCATCAAAGGCAAAACCGCAATCCTCAATTTTCCTAATATTTCAAACATGCTTCCTATACCTGCCACGTCAGCACCACGTGATATTCAAGCTGCGGCAACAGCAGCGGCTGCTATGGTTGACTTTGATAAGCCTGTCGTGCATGTTACTGGCCAATGTTGTTCTGAATCTGAACATGAACAAGAACAAGAACAAGAGCTTAGTCAAATTGTTGAACTTCCTAAAATTAATGAAGGTGAAGATGACTCGGTTGTTGACTCAGCTGGTTCTGAGTTTCTTTTGCTTGATGACTCGGTTAATAGTACTAACTGGGACGTTTATCATCATCCTCTTACTCCATCAATTGGTTTTGAAGATGGAATTGAATTCTATGCTACTTTTTCTGATGATTTTTTATCACCCATTTGGGATTGA 711 0.4191 MTQTTTTTSSETTTTTTTSNSSTSSSSSPLPSHSTQKQTSTKPKDDKNNNKHPTYHGVRKRSWGKWVSEIREPRKKSRIWLGTFSTPEAAARAHDVAALTIKGKTAILNFPNISNMLPIPATSAPRDIQAAATAAAAMVDFDKPVVHVTGQCCSESEHEQEQEQELSQIVELPKINEGEDDSVVDSAGSEFLLLDDSVNSTNWDVYHHPLTPSIGFEDGIEFYATFSDDFLSPIWD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01447 236 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 SUPERFAMILY DNA-binding domain 54 111 IPR016177 GO:0003677
Vifa4g01447 236 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 CDD AP2 55 112 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 MobiDBLite consensus disorder prediction 1 38 - -
Vifa4g01447 236 MobiDBLite consensus disorder prediction 39 53 - -
Vifa4g01447 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 179 - -
Vifa4g01447 236 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Vifa4g01447 236 MobiDBLite consensus disorder prediction 1 60 - -
Vifa4g01447 236 FunFam Ethylene-responsive transcription factor 2 54 112 - -
Vifa4g01447 236 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01447 Vifa-Chr4 429509607 429510317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01447 1 215 AP2-EREBP Transcription Factor Family AT5G11590 42.194 1.26e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g01447 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01447 K09286 - gmx:100804056 187.578