Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01444 ATGGAAGCACAAGATTACTTTGTCGGTGGTGGATACTACGGTGGTGCCGGAGGACTCGACCAATTCTCGCCGGAGAAACGTCACGGTTACAGTGATCAGAAGCCTTGTGAGCCGTTTGCCATTGATGACCTGCTTGATTTCTCCGATGCTGACGCAATTATGTCAGATGGATTCTTCGATAACAATGTTGCCGGAAATTCAACTAACTCTTCCACTGTTACCGCAATTGACAGCTGCAACTCATCAGGCTCAGCCGGAGATAACCGTTTCGCAGGCACACTTGTTCCCTGTGGTTTTGCCGGTGATGTTCAGCTCACCGGTGAACTCTGTGTTCCGTATGATGATATGGCGGAATTGGAATGGCTTTCGAATTTCGTGGAAGATTCGTACTCTGCTGAAGAGGAATTGAAAACACTGCAACTTCTGTCCGGCGCCGGTGCAGAAACGCCTCTCCCAGGGAAAGCGCGTAGCAAACGCTCACGCGCGGCTCCAGGAGACTGGTCCACGCGCTTGCTCCATCTCCCCGACGCGCAGGTTTCTCAGATGAATATTATGCCGGTGAAGAAGCGTGAGGATCCTAACGCAGAATGCTCCGGGAGAAAATGTCTGCATTGCGGCACCGACAAGACGCCGCAGTGGCGAACCGGACCGATGGGACCGAAGACTCTTTGCAATGCTTGCGGCGTGAGGTTTAAGTCCGGTAGGTTGGTGCCGGAGTATCGACCGGCGGCGAGTCCGACTTTCGTTTCGGCGAAGCATTCGAATTCGCATAGGAAGGTTCTGGAACTGAGGAGGCAGAAAGAGATGCAAAGATCACAGCATCAACAGCTTCTAAGTCATGGTTCAATTTTCGGCGTATCCAACGGTGGTGATGAGTTTATCAATTATCATCATCATCATCATTGTGGGCCAGAGTTTAGGCATGTTATCTAG 933 0.5134 MEAQDYFVGGGYYGGAGGLDQFSPEKRHGYSDQKPCEPFAIDDLLDFSDADAIMSDGFFDNNVAGNSTNSSTVTAIDSCNSSGSAGDNRFAGTLVPCGFAGDVQLTGELCVPYDDMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAETPLPGKARSKRSRAAPGDWSTRLLHLPDAQVSQMNIMPVKKREDPNAECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQLLSHGSIFGVSNGGDEFINYHHHHHCGPEFRHVI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01444 310 Gene3D - 197 277 IPR013088 GO:0006355|GO:0008270
Vifa4g01444 310 SMART GATA_3 196 246 IPR000679 GO:0006355|GO:0043565
Vifa4g01444 310 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Vifa4g01444 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 259 - -
Vifa4g01444 310 FunFam GATA transcription factor 191 277 - -
Vifa4g01444 310 PANTHER GATA TRANSCRIPTION FACTOR 33 275 - -
Vifa4g01444 310 MobiDBLite consensus disorder prediction 147 166 - -
Vifa4g01444 310 Pfam GATA zinc finger 202 235 IPR000679 GO:0006355|GO:0043565
Vifa4g01444 310 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Vifa4g01444 310 CDD ZnF_GATA 201 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01444 Vifa-Chr4 427005672 427006832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01444 39 310 C2C2-Gata Transcription Factor Family AT4G32890 45.659 5.55e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa4g01444 GATA 6e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01444 4 427005672 427006832 Vifa4g01444 4 427005672 427006832 ECH