Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01443 ATGGCAATGTCCTGCAAGGATGGTAATAAGCATTTGATGGATAATGGAAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTCGAGCGGCTTTATCATGATTGCCCTAAACCGAGTTCAATTCGGAGACAGCAGCTCATTCGGGAGTGTCCGATTCTCTCTAATATTGAGCCGAGGCAGATTAAAGTTTGGTTCCAGAATAGAAGGTGTAGGGAGAAGCAGAGGAAAGAGTCTTTTAGGTTGCAAGGTGTGAATAGGAAGTTGACTGCTATGAATAAGCTGCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCATCTTGTGTATGAGAATGGCTATTTTCGGCAAAATACTCAGAATGCTACCAAAGACACGAGTTGTGAGTCAGTTGTGACGAGTGGTCAACACAATATGACTAGTCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGCATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTTGAACCCACTAGGGTTGCAGAAATCCTCAAAGACCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGACATTGTCAACGTGCTTCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACTACATTGGCACCTGCGCGAGACTTCTGGTTGCTACGCTACACTTCAGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGCCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGATACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTAGAGCCATGGAGTGTGCCAGAAGTACTGCGCCCTTTATATGAATCATCAACAGTGCTGGCTCAAAAGACTACAATGGCGGCCTTATGTCATCTAAGACAGATCTCGCATGAAGTTTCTCAGCCCAGTGTCTCTGGGTGGGGTAGACGTCCAGCAGCTCTGCGGGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGACAATGATGGGCAACGATGGTGTAGATGATGTCACTATTCTTGTGAATTCATCACCTGAAAAATTGATGGGTCTGAATCTTTCCTTTGGCAATGGATTCCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCATCAATGCTATTACAGAATGTGCCTCCCGCCATTCTCCTAAGGTTCCTGCGAGAACACAGATCAGAATGGGCAGACAATAACATGGACGCTTACACAGCTGCTGCCATTAAAGTCGGTCCTTGTAGCTTAACAGGGTCTCGCATGGGAAATTATGGGGGTCAAGTTATACTACCGTTAGCTCACACTATTGAGCACGAGGAGTTTTTGGAAGTCATTAAGTTGGACGGAGTTTCCCATTCTCCTGAAGATGCAATGATGCCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCCCCACTTCTGCCTTCTGGATTTCGCATCATTCCTCTAGAATCTGGAAAAGAAGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGATGTTGGGCCCACTGGAAACCGAACTTCAAGTGATAATGCTGGAAATTCTGGTTGTGTGAGATCTGTGATGACAATAGCATTCGAATTTGCATTTGAAAGTCACATGCAAGAGAATGTAGCATGCATGGCACGCCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCATCGCATCTGAGTTCTCATGCTGGGCTGAGGTCACCATTAGGAACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGATGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAAGGAAAAGAATCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCTTTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGTCGAAAAGCACTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATATGTCTCTCAAGCATGGGGCGACCTGTCTCATATGAGAGAGTTGTTGCTTGGAAGGTGTTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2508 0.4541 MAMSCKDGNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAAFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALCHLRQISHEVSQPSVSGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPEKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRMGNYGGQVILPLAHTIEHEEFLEVIKLDGVSHSPEDAMMPRELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPTGNRTSSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGKESILKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKALFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNDEQNAHCICFMFVNWSFV 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01443 835 ProSiteProfiles START domain profile. 148 349 IPR002913 GO:0008289
Vifa4g01443 835 Pfam MEKHLA domain 692 834 IPR013978 -
Vifa4g01443 835 Gene3D - 10 81 - -
Vifa4g01443 835 CDD START_ArGLABRA2_like 152 367 - -
Vifa4g01443 835 Pfam START domain 158 365 IPR002913 GO:0008289
Vifa4g01443 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 835 IPR044830 GO:0003700
Vifa4g01443 835 SMART HOX_1 14 80 IPR001356 GO:0003677
Vifa4g01443 835 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Vifa4g01443 835 CDD homeodomain 17 77 IPR001356 GO:0003677
Vifa4g01443 835 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vifa4g01443 835 Gene3D - 193 368 IPR023393 -
Vifa4g01443 835 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vifa4g01443 835 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vifa4g01443 835 Coils Coil 86 106 - -
Vifa4g01443 835 CDD bZIP 69 108 - -
Vifa4g01443 835 SUPERFAMILY Bet v1-like 157 365 - -
Vifa4g01443 835 SMART START_1 157 367 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01443 Vifa-Chr4 425208268 425215016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01443 1 787 Homeobox Transcription Factor Family AT1G52150 83.081 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g01443 START 1.8e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01443 K09338 - gmx:100800165 1567.75