Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01442 ATGGCAATGTCCTGCAAGGATGGTAATAAGCATTTGATGGATAATGGAAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTCGAGCGGCTTTATCATGATTGCCCTAAACCGAGTTCAATTCGGAGACAGCAGCTCATTCGGGAGTGTCCGATTCTCTCTAATATTGAGCCGAGGCAGATTAAAGTTTGGTTCCAGAATAGAAGGTGTAGGGAGAAGCAGAGGAAAGAGTCTTTTAGGTTGCAAGGTGTGAATAGGAAGTTGACTGCTATGAATAAGCTGCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGCTACCAAAGACACGAGTTGTGAGTCAGTTGTGACGAGTGGTCAACACAATATGACTAGTCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGCATTTCTTTCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTTGAACCCACTAGGGTTGCAGAAATCCTCAAAGACCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGACATTGTCAACGTGCTTCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACTACATTGGCACCTGCGCGAGACTTCTGGTTGCTACGCTACACTTCAGTTGTAGAAGATGGCAGCCTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGCCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGATACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTAGAGCCATGGAGTGTGCCAGAAGTACTGCGCCCTTTATATGAATCATCAACAGTGCTGGCTCAAAAGACTACAATGGCGGCCTTATGTCATCTAAGACAGATCTCGCATGAAGTTTCTCAGCCCAGTGTCTCTGGGTGGGGTAGACGTCCAGCAGCTCTGCGGGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGACAATGATGGGCAACGATGGTGTAGATGATGTCACTATTCTTGTGAATTCATCACCTGAAAAATTGATGGGTCTGAATCTTTCCTTTGGCAATGGATTCCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCATCAATGCTATTACAGAATGTGCCTCCCGCCATTCTCCTAAGGTTCCTGCGAGAACACAGATCAGAATGGGCAGACAATAACATGGACGCTTACACAGCTGCTGCCATTAAAGTCGGTCCTTGTAGCTTAACAGGGTCTCGCATGGGAAATTATGGGGGTCAAGTTATACTACCGTTAGCTCACACTATTGAGCACGAGGAGTTTTTGGAAGTCATTAAGTTGGACGGAGTTTCCCATTCTCCTGAAGATGCAATGATGCCCAGAGAATTGTTTCTGTTGCAACTCTGCAGCGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCCCCACTTCTGCCTTCTGGATTTCGCATCATTCCTCTAGAATCTGGAAAAGAAGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGATGTTGGGCCCACTGGAAACCGAACTTCAAGTGATAATGCTGGAAATTCTGGTTGTGTGAGATCTGTGATGACAATAGCATTCGAATTTGCATTTGAAAGTCACATGCAAGAGAATGTAGCATGCATGGCACGCCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCATCGCATCTGAGTTCTCATGCTGGGCTGAGGTCACCATTAGGAACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGATGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAAGGAAAAGAATCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACTCTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCTTTACAAGATATAACTTTAGAGAAAATATTTGATGATCATGGTCGAAAAGCACTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATATGTCTCTCAAGCATGGGGCGACCTGTCTCATATGAGAGAGTTGTTGCTTGGAAGGTGTTGAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2457 0.4558 MAMSCKDGNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAAFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALCHLRQISHEVSQPSVSGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPEKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRMGNYGGQVILPLAHTIEHEEFLEVIKLDGVSHSPEDAMMPRELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDVGPTGNRTSSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGKESILKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKALFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNDEQNAHCICFMFVNWSFV 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01442 818 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vifa4g01442 818 Pfam MEKHLA domain 675 817 IPR013978 -
Vifa4g01442 818 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Vifa4g01442 818 SMART HOX_1 14 80 IPR001356 GO:0003677
Vifa4g01442 818 Gene3D - 10 81 - -
Vifa4g01442 818 SUPERFAMILY Bet v1-like 140 348 - -
Vifa4g01442 818 Pfam START domain 141 348 IPR002913 GO:0008289
Vifa4g01442 818 Gene3D - 176 351 IPR023393 -
Vifa4g01442 818 CDD homeodomain 17 77 IPR001356 GO:0003677
Vifa4g01442 818 ProSiteProfiles START domain profile. 131 332 IPR002913 GO:0008289
Vifa4g01442 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 818 IPR044830 GO:0003700
Vifa4g01442 818 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vifa4g01442 818 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vifa4g01442 818 Coils Coil 86 106 - -
Vifa4g01442 818 SMART START_1 140 350 IPR002913 GO:0008289
Vifa4g01442 818 CDD START_ArGLABRA2_like 135 350 - -
Vifa4g01442 818 CDD bZIP 69 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01442 Vifa-Chr4 425208268 425215016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01442 1 770 Homeobox Transcription Factor Family AT1G52150 81.566 0.0 1343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g01442 START 1.7e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01442 K09338 - gmx:100800165 1532.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01442 4 425208268 425215016 Vifa4g01442 4 425208268 425215016 ECH
Vifa5g00220 5 29757849 29765214 Vifa4g01442 4 425208268 425215016 PCT