Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01441 ATGGCATCATCATCCTCAAGCAACAGCGCAAACTACGACATGCCGTGGGTCGAGAAGTACTGCCCCAACAAGGTCGTCGACATCGTCGGCAACGAAGACGCCGTTTCCAGACTCCAAGTCACCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACCAGTATACTTGCCCCTGCGCACGAGCTTCTCGGTCCCAATTATAGAAAAGCTGTTCTTGAACTAAATGCATCAGATGATAGAGGAATAGATGTCGTGAGGAACCAGATCAAAATGTTTGCTCAAAAGAAAGTAACACTTCCCCCAGGCTGA 336 0.494 MASSSSSNSANYDMPWVEKYCPNKVVDIVGNEDAVSRLQVTARDGNMPNLILSGPPGTGKTTSILAPAHELLGPNYRKAVLELNASDDRGIDVVRNQIKMFAQKKVTLPPG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01441 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 107 IPR027417 -
Vifa4g01441 111 Pfam ATPase family associated with various cellular activities (AAA) 50 104 IPR003959 GO:0005524|GO:0016887
Vifa4g01441 111 CDD AAA 29 107 - -
Vifa4g01441 111 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 14 106 - -
Vifa4g01441 111 Gene3D - 7 111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01441 Vifa-Chr4 425039676 425040011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01441 12 111 Core DNA Replication Machinery Family AT1G63160 90.000 1.72e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01441 K10755 - csav:115709200 199.519