Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01434 ATGCCGGTAGGGAGAAGTGGAGCGCGCCGGGGACGGCCACCGAAGCGACAACGACAGCCGCAGCGGGAAGAGCGAGAAAGTCCGGTTGAAGAGGAAGCGATTGCGAATAGGACGAGACGGAGGCGTGCAGCTGCAGCGGCTGTGAACGATAAGGTTGAAGAGCAGGTGGCTGTGGTTACGGCGGGAAATGAGAACGTAGTTGTTGCTGCGGTGGAGAAGGAAGGGGAGGGTGATCGGGAATTGGAAGAAGGGGGAAAAGAGAAGAAAGCGATGGAGGAATGTGATAACGGAGGTCAAAGCAACGGTAAGGCTGAAGCTGGTGAAGAGGACAGTAACGCCTTGGTTATTCCCGAAAAGGTTCAAGTAGGCAATTCTCCTTTGTATAAAACTGAGAAAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATTTTGGTCGGCGTGTTTCTGGTGGAAATTTGAGCGAGAGAACTGGACCTGAAGCTGTAGAGGTAGCAATAAAATTTGAGCACATTAGTAGTAAAGGATGTAACAATGCACCACCGAATGAGTGGAAAGTGTACAACACCCTCGGTGGAAGTCATGGTGTGCCACAGGTGCATTACAAGGGCAAGCAAGGTGACTATTTCATCATGATTATGGATATTCTAGGACCTAGCTTGTGGGATGTTTGGAATAATTATTCTCACACCCTGTCCACTGAAATGGTTGCTTGTATTGCCATTGAATCAATATCTATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGAGATGTGAAGCCTGAGAATTTTCTGCTTGGCGCTTCTGGGACACCTGACGAGAAAAAATTGTTCCTGGTAGATCTTGGATTAGCTACTAAATGGCGGGATAGTACATCTGGTTTGCATGTGAAATATGACCAAAGGCCGGATGTTTTCAGGGGCACAGTCCGCTATGCAAGTGTGCATGCACATTTGGGGAGAACTGGAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTAATATTTCTTCTTCGAGGCCGTCTTCCTTGGCAGGGATTCCAGGGAGAAAACAAAGGATATCAGGTTTGCAGGAAGAAGATGGGAACGTCTCCCGAGACACTCTGTTGTTTTTGTCCCCAGCCTTTTAAAGAGTTTATTGAACATGTAGTGAGCTTAAAGTTTGATGAAGAGCCTAATTATGCAAAATACATTTCTCTCTTTGACGGGGTTGTTGGTCCAAACCCAGATATTAGGCCACTTAATACAGAAGGGGCTCAAAAGCTTGTTGGTCTTAAAAGAGGCCGGTTGCCTTCAGACGATGATGATGAACAACCCAAAAAGAAGGTTCGAATGGGTTTGCCAGCCAACCAGTGGATTAGTGTTTACAATGCCCGTAGACCGATGAAACAAAGATATCACTACAATGTGTCAAGTACAAGGCTAACCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTTCTTCATCTCAAGGCCTATGGGCCTTAATCATGGATGCAGGGACAGGTTTCACTTCCCAAGTTTATAAACTCTCCCCCCAATTTTTGCACAAGGAATGGATCATGGAACAGTGGGAAAAAAATTATTATATCAGTGCAGTTGCAGGAGTTGTAAATGGGAGTTCACTTGTAGTAATGTCTAAAGGCACCCAGTATTTGCAGCAATCATACAAAGTCAGTGATTCATTTCCTTTCAAATGGATTAACAAAAAGTGGAAGGAGGGCTTTTATGTAACTTCAATGGCCACCGCAGGGGCCAAATGGGGAGTAGTTATGTCTCGTGGGGCAGGGTTTACAGAGCAGGTAGTCGAACTAGACTTTCTGTATCCTAGTGAAGGGATTCACAAGCGATGGGAGTCTGGATACCGAATCACATCACTTGCTGCAACTTGGGACCAAGCCGCTTTTGTTCTGAGTGTTCCTAGTAAGAAGCCCCAGGACGAAACTCAGGAAACACTAAGGACTACTGCTTTTCCTAGTACCCATGTTAAGGATAAGTGGGACAAGAACCTCTACATTGCCTCTATTTGCTATGGGCGTACCGTTTCTTGA 2076 0.4571 MPVGRSGARRGRPPKRQRQPQREERESPVEEEAIANRTRRRRAAAAAVNDKVEEQVAVVTAGNENVVVAAVEKEGEGDRELEEGGKEKKAMEECDNGGQSNGKAEAGEEDSNALVIPEKVQVGNSPLYKTEKKLGKGGFGQVYFGRRVSGGNLSERTGPEAVEVAIKFEHISSKGCNNAPPNEWKVYNTLGGSHGVPQVHYKGKQGDYFIMIMDILGPSLWDVWNNYSHTLSTEMVACIAIESISILEKMHSRGYVHGDVKPENFLLGASGTPDEKKLFLVDLGLATKWRDSTSGLHVKYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGYQVCRKKMGTSPETLCCFCPQPFKEFIEHVVSLKFDEEPNYAKYISLFDGVVGPNPDIRPLNTEGAQKLVGLKRGRLPSDDDDEQPKKKVRMGLPANQWISVYNARRPMKQRYHYNVSSTRLTQHIEKGNEDGLYISSVSSSQGLWALIMDAGTGFTSQVYKLSPQFLHKEWIMEQWEKNYYISAVAGVVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWKEGFYVTSMATAGAKWGVVMSRGAGFTEQVVELDFLYPSEGIHKRWESGYRITSLAATWDQAAFVLSVPSKKPQDETQETLRTTAFPSTHVKDKWDKNLYIASICYGRTVS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01434 691 ProSiteProfiles Protein kinase domain profile. 128 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01434 691 SMART serkin_6 128 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01434 691 MobiDBLite consensus disorder prediction 70 112 - -
Vifa4g01434 691 SUPERFAMILY Protein kinase-like (PK-like) 128 407 IPR011009 -
Vifa4g01434 691 ProSitePatterns Protein kinases ATP-binding region signature. 134 167 IPR017441 GO:0005524
Vifa4g01434 691 MobiDBLite consensus disorder prediction 1 52 - -
Vifa4g01434 691 FunFam casein kinase 1-like protein HD16 101 447 - -
Vifa4g01434 691 Pfam Protein kinase domain 128 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01434 691 CDD STKc_CK1 128 404 - -
Vifa4g01434 691 MobiDBLite consensus disorder prediction 17 48 - -
Vifa4g01434 691 PANTHER CASEIN KINASE-RELATED 128 661 - -
Vifa4g01434 691 Gene3D Transferase(Phosphotransferase) domain 1 91 447 - -
Vifa4g01434 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa4g01434 691 MobiDBLite consensus disorder prediction 71 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01434 Vifa-Chr4 424138397 424143591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01434 128 353 AGC Kinase Gene Family AT3G08730 25.439 8.48e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vifa4g01434 Pkinase 3.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01434 - - gmx:100799630 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01434 4 424138397 424143591 Vifa4g01434 4 424138397 424143591 ECH