Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01423 ATGATTCTTCTAGGAAAAAACCCTCATTTGAAGTTACTTCAGTTTCTTCTCTTTTTAGTTTACCTTCATTTCAACAGAATCAGTTCTTATCAGATGGCACCTATGAACTGTACGGATACAAGCCGTGTTTGTACTTCTTTCATGGCCTATAAGCCTAACAAAAACCAGTCTTTGGGAGTGATTCAAAGCATGTTTGATGTGTTGCAAAGTGACATCACAGTTGAAGGAAATGGGTTTGTGGATGATTTGGTGATGGAGGCCTATGATGGGCTTATTTTGCTTCCCAACACTTCAAGGAAAGCAAGGAATGGTGCTGTGATATCATTGAGGTTGTTTTGTGGATGTTCTAGTGGATTGTGGAACTATTTCTTGAGTTATGTGTTGAGAGATGGAGATAGTGTTGAATCTTTGGCAAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGACCTGATAATGTCACTGTCGGTTCACTTTATTATATTCCTCTTAATTCTGTTCCTGGTGATCCTTATCTTGTGAACAATGCTTCTCCACCAGCTTCTGTTCCTACCCCTTCTGTTGATAATTTTTCAGGTGATGAGGTTAATCATAAGTATCATGTACCCTTTGGATGGATCATTGGGGGTTTAGGAGTTGGTCTTATTCTGATAATATTTGGCATCATTCTATGTGTTTGCATTAAATCGTTGAGTTGTTTCTCTGATTCTAGAAGTCATGAAAAAGATGATGAGCGAAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGTAAACATGTTGACCAGAAGCAGACAGACGGTGACTCTAGCAATCACACGATTACCGTTCCAAAAGCTTCAACTCTTGGACCTGACGTGTTTGACATGGATAAACCGGTAGTTTTTGCATATGAAGAGATTTTTTCCTCAACGGAAGGTTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTGTACTATAGCCTCCTCCGCGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACAAAAACAAAAGAGTTTACATCAGAGGTTAAAGTTCTGTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGCTATGCAGCTAGTCACGACGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAGAATAAGGGTCATTCGCCACTTTCTTGGATCATGAGGGTCCAAATCGCACTTGATGCTGCTAGGGGACTTGAATATATACATGAACACACAAAAGCTCATTATGTTCACCGCGATATCAAGACGAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAAATATCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAACGAGGGAGACGTTTCTACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATACTTGACTGACGGCCTTGCAACGATCAAAAGTGATGTCTATGCATTTGGTGTTGTTGTTTTTGAGATTATAACAGGAAAGGAGGCTATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGGTCGCTGGCCTCAATTATGTTAGCGGTTCTTAAGAACTCACCTGATTCCTTGAGCATGTCAAGCATGAGAGATTACATTGATCCAAATATGATGAATCTGTATCCTCATGATTGTGTATTTAAGATGGCTATGCTAGCGAAGCAATGTGTGGACGACGATCCGATCTTACGACCTGATATGAAACAAGTAGTGATTTCCATCTCACAGATTCTACTCTCTTCTATTGAGTGGGAAGCAACACTAGCTGGAAACAGTCAAGTATTCAGTGGACTTGTTCAAGGAAGATAG 1911 0.3967 MILLGKNPHLKLLQFLLFLVYLHFNRISSYQMAPMNCTDTSRVCTSFMAYKPNKNQSLGVIQSMFDVLQSDITVEGNGFVDDLVMEAYDGLILLPNTSRKARNGAVISLRLFCGCSSGLWNYFLSYVLRDGDSVESLASRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLNSVPGDPYLVNNASPPASVPTPSVDNFSGDEVNHKYHVPFGWIIGGLGVGLILIIFGIILCVCIKSLSCFSDSRSHEKDDERKVSHKFHILRNPSFFCGSGRYICGKHVDQKQTDGDSSNHTITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEVKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLTDGLATIKSDVYAFGVVVFEIITGKEAIIRTEGMMTKNPERRSLASIMLAVLKNSPDSLSMSSMRDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISISQILLSSIEWEATLAGNSQVFSGLVQGR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01423 636 Gene3D LysM domain 121 175 IPR036779 -
Vifa4g01423 636 FunFam PTI1-like tyrosine-protein kinase 3 398 622 - -
Vifa4g01423 636 FunFam Kinase family protein 301 397 - -
Vifa4g01423 636 SMART serkin_6 326 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01423 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vifa4g01423 636 Gene3D Phosphorylase Kinase; domain 1 302 397 - -
Vifa4g01423 636 Pfam LysM domain 126 163 IPR018392 -
Vifa4g01423 636 CDD LysM 125 168 IPR018392 -
Vifa4g01423 636 ProSitePatterns Protein kinases ATP-binding region signature. 332 353 IPR017441 GO:0005524
Vifa4g01423 636 ProSiteProfiles LysM domain profile. 124 168 IPR018392 -
Vifa4g01423 636 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 73 630 IPR044812 GO:0019199|GO:0045087
Vifa4g01423 636 SMART LysM_2 125 169 IPR018392 -
Vifa4g01423 636 SUPERFAMILY LysM domain 124 169 IPR036779 -
Vifa4g01423 636 SUPERFAMILY Protein kinase-like (PK-like) 305 606 IPR011009 -
Vifa4g01423 636 Pfam Protein tyrosine and serine/threonine kinase 330 605 IPR001245 GO:0004672|GO:0006468
Vifa4g01423 636 Gene3D Transferase(Phosphotransferase) domain 1 399 622 - -
Vifa4g01423 636 ProSiteProfiles Protein kinase domain profile. 326 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01423 Vifa-Chr4 422408158 422411645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01423 34 636 Receptor kinase-like Gene Family AT1G51940 64.330 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa4g01423 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01423 - - gmx:100796989 1020.38