Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01422 ATGATTCTTCTAGGAAAAAACCCTCATTTGAAGTTACTTCAGTTTCTTCTCTTTTTAGTTTACCTTCATTTCAACAGAATCAGTTCTTATCAGATGGCACCTATGAACTGTACGGATACAAGCCGTGTTTGTACTTCTTTCATGGCCTATAAGCCTAACAAAAACCAGTCTTTGGGAGTGATTCAAAGCATGTTTGATGTGTTGCAAAGTGACATCACAGTTGAAGGAAATGGTTGGGATTATCTATTCATAAGGAAGAACTGTTCTTGTGCATCTGGTATAAAGAAATATGTGTCTAATACAACTTACACTGTGAAATCCAATGAAGGGTTTGTGGATGATTTGGTGATGGAGGCCTATGATGGGCTTATTTTGCTTCCCAACACTTCAAGGAAAGCAAGGAATGGTGCTGTGATATCATTGAGGTTGTTTTGTGGATGTTCTAGTGGATTGTGGAACTATTTCTTGAGTTATGTGTTGAGAGATGGAGATAGTGTTGAATCTTTGGCAAGTAGATTTGGGGTTAGTATGGATAGTATTGAGGATGTGAATGGTCTTGATGGACCTGATAATGTCACTGTCGGTTCACTTTATTATATTCCTCTTAATTCTGTTCCTGGTGATCCTTATCTTGTGAACAATGCTTCTCCACCAGCTTCTGTTCCTACCCCTTCTGTTGATAATTTTTCAGGTGATGAGGTTAATCATAAGTATCATGTACCCTTTGGATGGATCATTGGGGGTTTAGGAGTTGGTCTTATTCTGATAATATTTGGCATCATTCTATGTGTTTGCATTAAATCGTTGAGTTGTTTCTCTGATTCTAGAAGTCATGAAAAAGATGATGAGCGAAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGTAAACATGTTGACCAGAAGCAGACAGACGGTGACTCTAGCAATCACACGATTACCGTTCCAAAAGCTTCAACTCTTGGACCTGACGTGTTTGACATGGATAAACCGGTAGTTTTTGCATATGAAGAGATTTTTTCCTCAACGGAAGGTTTCTCTGATTCAAATCTACTTGGACATGGAACATATGGATCTGTGTACTATAGCCTCCTCCGCGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACAAAAACAAAAGAGTTTACATCAGAGGTTAAAGTTCTGTGCAAGGTTCATCATGCTAACCTGGTAGAATTGATTGGCTATGCAGCTAGTCACGACGAGCTTTTCCTAGTTTATGAATATGCTCAAAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAGAATAAGGGTCATTCGCCACTTTCTTGGATCATGAGGGTCCAAATCGCACTTGATGCTGCTAGGGGACTTGAATATATACATGAACACACAAAAGCTCATTATGTTCACCGCGATATCAAGACGAGCAACATTTTACTTGATGCTTCCTTTAAAGCAAAAATATCAGATTTTGGATTGGCGAAACTTGTCGGGATAACAAACGAGGGAGACGTTTCTACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATACTTGACTGACGGCCTTGCAACGATCAAAAGTGATGTCTATGCATTTGGTGTTGTTGTTTTTGAGATTATAACAGGAAAGGAGGCTATTATTCGAACAGAAGGCATGATGACAAAAAATCCTGAAAGACGGTCGCTGGCCTCAATTATGTTAGCGGTTCTTAAGAACTCACCTGATTCCTTGAGCATGTCAAGCATGAGAGATTACATTGATCCAAATATGATGAATCTGTATCCTCATGATTGTGTATTTAAGATGGCTATGCTAGCGAAGCAATGTGTGGACGACGATCCGATCTTACGACCTGATATGAAACAAGTAGTGATTTCCATCTCACAGATTCTACTCTCTTCTATTGAGTGGGAAGCAACACTAGCTGGAAACAGTCAAGTATTCAGTGGACTTGTTCAAGGAAGATAG 2007 0.3936 MILLGKNPHLKLLQFLLFLVYLHFNRISSYQMAPMNCTDTSRVCTSFMAYKPNKNQSLGVIQSMFDVLQSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTYTVKSNEGFVDDLVMEAYDGLILLPNTSRKARNGAVISLRLFCGCSSGLWNYFLSYVLRDGDSVESLASRFGVSMDSIEDVNGLDGPDNVTVGSLYYIPLNSVPGDPYLVNNASPPASVPTPSVDNFSGDEVNHKYHVPFGWIIGGLGVGLILIIFGIILCVCIKSLSCFSDSRSHEKDDERKVSHKFHILRNPSFFCGSGRYICGKHVDQKQTDGDSSNHTITVPKASTLGPDVFDMDKPVVFAYEEIFSSTEGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFTSEVKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFKAKISDFGLAKLVGITNEGDVSTTKVVGTYGYLAPEYLTDGLATIKSDVYAFGVVVFEIITGKEAIIRTEGMMTKNPERRSLASIMLAVLKNSPDSLSMSSMRDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISISQILLSSIEWEATLAGNSQVFSGLVQGR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01422 668 SUPERFAMILY Protein kinase-like (PK-like) 337 638 IPR011009 -
Vifa4g01422 668 ProSiteProfiles LysM domain profile. 156 200 IPR018392 -
Vifa4g01422 668 Gene3D Transferase(Phosphotransferase) domain 1 431 654 - -
Vifa4g01422 668 SUPERFAMILY LysM domain 156 201 IPR036779 -
Vifa4g01422 668 Pfam Protein tyrosine and serine/threonine kinase 362 637 IPR001245 GO:0004672|GO:0006468
Vifa4g01422 668 Gene3D LysM domain 153 207 IPR036779 -
Vifa4g01422 668 Gene3D Phosphorylase Kinase; domain 1 334 429 - -
Vifa4g01422 668 ProSitePatterns Protein kinases ATP-binding region signature. 364 385 IPR017441 GO:0005524
Vifa4g01422 668 CDD LysM 157 200 IPR018392 -
Vifa4g01422 668 SMART LysM_2 157 201 IPR018392 -
Vifa4g01422 668 ProSiteProfiles Protein kinase domain profile. 358 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01422 668 SMART serkin_6 358 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01422 668 Pfam LysM domain 158 195 IPR018392 -
Vifa4g01422 668 FunFam Kinase family protein 333 429 - -
Vifa4g01422 668 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 662 IPR044812 GO:0019199|GO:0045087
Vifa4g01422 668 FunFam PTI1-like tyrosine-protein kinase 3 430 654 - -
Vifa4g01422 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01422 Vifa-Chr4 422408158 422411645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01422 34 668 Receptor kinase-like Gene Family AT1G51940 66.563 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa4g01422 PK_Tyr_Ser-Thr 8.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01422 - - gmx:100796989 1096.65