Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01420 ATGGGAAAAGCTAGTAGATGGTTGAAGAATTTGTTAGGAATGAAGAAGGAGAAAGAGAAGGAAAATGAACATGTTGATGTTAATTTAGGTTCATTGACACCTAATAACAGTAAGAAAGAGAAGAAAAGATGGAGTTTTGGAAAGCAAGGGAAGAGTTCAGACTCTAACATTGCTCCTACTTCAGCTTCTGATTATGATTCTGCTTGGCTTAGATCCTATATGGTTGATACTGAGAATCAGCAGAACAAACATGCAATTGCTGTTGCGGCGGCCACGGCCGCCGCTGCCGATGCTGCGGTAGCCGCAGCGCAGGCTGCCGTGGCGGTTGTGAGGCTGACTAGTCAAGGTAGAGGTACATTGTTTAGTGGAAGTAGAGAGAAATGGGGTGCTGTAAAGATTCAAACTTTCTTCAGAGGCTATTTGGCAAGGAAAGCTCTTAGAGCGTTGAAAGGTTTGGTTAAGATACAAGCTCTTGTTAGAGGCTATCTTGTTAGGAAAAGAGCTGATGCAACTCTTCATAGTATGCAAGCTTTGATTAGAGCTCAAAATTCGGTTAGATTGCAAAGAGCTCGTCGATCCATGAGCAAAGAAAATCGGTTTCTATCTGAAAATCTTGCAAGAAAATCTCTGGAACGATATGACGAAACACGTAGCGAATTCCACAGCAAAAGAGTACCAACATCTTATGAAACACCATTGAATGGATTTGATGAAAGTCCAAAGATAGTCGAAATCGACACATACAAAACCAAATCGAAATCTAGAAGATTCACCTCAACAATGTCCGAATACGGAGAAGAATTACCACCATGTCACGCAACAATTTCATCACCTCTTCCAACCAGAATCTCAGTTCCCGATCACCGAAACCATCAACAACAGCAAGACTTTGATTGGTACTTCAACAATCTCGAAGAGTGTAGGTATCCAACAACGCATAACACGCCTCGCTTCAACCATTCGTCTTCAAAGCTTCCTCCAAATACACCATCAAAAAGTGTTTGTGGCGGAGAAAGCACTTGTTATAGACCTTATGATTACTCGAATTTTCCGAATTACATGGCGAATACTCAGTCATTTAAGGCAAAGTTAAGGTCTCATAGTGCTCCTAAACAAAGACCAGAAACACAACAAGAAGAAGAGTCTTGGAACTTTTGA 1158 0.4136 MGKASRWLKNLLGMKKEKEKENEHVDVNLGSLTPNNSKKEKKRWSFGKQGKSSDSNIAPTSASDYDSAWLRSYMVDTENQQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRADATLHSMQALIRAQNSVRLQRARRSMSKENRFLSENLARKSLERYDETRSEFHSKRVPTSYETPLNGFDESPKIVEIDTYKTKSKSRRFTSTMSEYGEELPPCHATISSPLPTRISVPDHRNHQQQQDFDWYFNNLEECRYPTTHNTPRFNHSSSKLPPNTPSKSVCGGESTCYRPYDYSNFPNYMANTQSFKAKLRSHSAPKQRPETQQEEESWNF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01420 385 PANTHER IQ-DOMAIN 5-RELATED 1 376 - -
Vifa4g01420 385 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Vifa4g01420 385 Pfam IQ calmodulin-binding motif 153 167 IPR000048 GO:0005515
Vifa4g01420 385 Gene3D - 129 168 - -
Vifa4g01420 385 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Vifa4g01420 385 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Vifa4g01420 385 MobiDBLite consensus disorder prediction 362 385 - -
Vifa4g01420 385 MobiDBLite consensus disorder prediction 15 59 - -
Vifa4g01420 385 SMART iq_5 148 169 IPR000048 GO:0005515
Vifa4g01420 385 SMART iq_5 125 147 IPR000048 GO:0005515
Vifa4g01420 385 Pfam Protein of unknown function (DUF4005) 315 381 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01420 Vifa-Chr4 421036894 421039033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01420 1 375 IQD Protein Family AT3G16490 53.109 2.09e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01420 - - gmx:100797686 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01420 4 421036894 421039033 Vifa4g01420 4 421036894 421039033 ECH
Vifa5g00241 5 34344942 34345968 Vifa4g01420 4 421036894 421039033 PCT