Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01411 ATGAGAATGCCCCTACATTTTCTCTCAGTATTGCTATGTGTCCTTACTATTTTTTATTTGATACAAGCTCAAGATCAATCAGGATTCATAAGCATAGATTGTGGTCTACCTGAAAATACTGGCTATGCTGAGACAACCACAGGCATAAACTACATTTCAGATGCAAAATTCATAGATACAGGTGTATCTATCAGGATACCCCCTATAGGCAACACTGTCCTACAGCAACTAGAACATGTGAGAAGCTTTCCTAGTGGAGTAAGAAACTGTTACAAAATAGATGTAACCAATGGTACTAAATACTTAATCAAAGCTTCATTCTACTATGGAAACTATGATGATCAAAATGATCCACCACAATTTGATCTTCATTTTGGGCCTAATATGTGGGATACAGTCAAGTTCACCAACTTATCACGCATCGCGGCCAGCGAGATCATTTACACTCCGTCACTAGATTACATACAACCATGTCTTGTTAACACAGGCAAAGGAACTCCTTTCATTTCGGTTATAGAGTTGAGGACTTTGAACAATCAAGCTTATGTTACATATTCGACTAAATCAGTGCTAGCGAACTTCTTTCGATTTGATTTAGGTTCCATCACAAACTTAGAATACAGGTACAAAGACGATGATTATGACCGAGTCTGGTTTCCTTTTACATGGGATGAAATGAAAAAACTAAGCACCAATGAAGATATATTAACTCAGAATATTTATAAGCCACCAGGAATTGTTATGAGCACTGCTGTTACACCATTTAATGAAAGTGCTCCTATACAATTCAGTTGGGATTCAGATAATCTAAATGATCAATATTACTCATATTTGCACTTCAATGAGGTTGAAAAGCTGGCTGAAAATGAAACTAGAGCATTCAATATCACAGTGAATGGATTACTTATGTATGGACCTGAGATACCTGCATACAGATCAGTAGATACTATATTTAGCACAGTAACTTTGACTGGAGCCAGAAAGTATATATTTTCACTTAATAAGGCAGGAAATTCAACTCTTCCACCTATTATCAATGCCTTTGAGGTTTATAAATTAATAGACTTCTCAAAATCAGAAACTAACCAGGATGATGTTGATACTATCACAAGCATCAAGAAGGCTTATGGTGTGGCTAGAAATTGGGAGGGAGATCCTTGTGGTCCTGTGAAGTATATGTGGGAGGGCCTAAACTGTAGTATTGGTGATAGCAATAACCCTCCAAGAGTCACATCTTTGAATTTGTCTTCAAGTGGATTGACAGGGCAGATAGTATCTTCTATATCAAACCTCTCTATGTTACAATATTTGGATTTATCAAACAATAGCTTAAATGGTCCTTTACCAGATTTTCTGATACAACTGCAGTCGCTAAAAGTATTAAATGTGGGAAAGAACAACCTTACAGGGTTAGTTCCAATTGGACTACTTGAGAAATCAGAAAGAGGTTCATTATTATTAAGTGTGGATGATAATGATGATCTTTGTACGAAGGAATCATGCAAAAAGAAGAAATCGTTTATAGCGCTTATTGCATCATTGTCTGCATTACTTGTAATCCTCTTGCTTTTACTTGGATTTTGGATATTCAAAAAGCGAAAAGTATTTATGTCTTCAAATTCTAAAAAAGAAGGTTCAAAGAAATCAAAACATCAAATATTCAGTCATGCTGAAATTCTAAATATTACTGAAAACTTCAAAACTATTATTGGAGAAGGAGGATTTGGAAAAGTTTACATTGGCATTCTACAAGACCAAACACAAGTCGCTGTTAAGAGACTTTCACCATCATCAATGCAAGGTTATAAGGAATTTCAATCTGAGGCACAACTTCTAGCGATTGTTCATCATAAAAATTTGGTCTCCCTCATTGGATATTGTGATGAAGGTGAAATAAAAGCATTAATTTATGAATACATGACCAATGGAAATCTACATCAACACTTGTTAGGTGGAAATTCAAATATCTTAAAATGGAATGACAGACTTAACATTGCAGTAGATGCGGCATACGGAATTGATTATATGCATAATGGAATTAAGCCCCCTATTGTGCATAGAGATTTGAAGCCTTCCAACATATTATTGGATGATAAAATGCATGCCAAGATTGCAGATTTTGGTCTAAGTAGAGTTTTTGGTAATGATATTGATTCACATATATCCACACGTCCTGCTGGTACATTTGGCTATCTTGATCCTGAATGTCAGAGAACAGGAAACATAAGTAAAAGAAATGACGTCTACAGCTTTGGAATAATTCTATTTGTGTTGATCACTGGTCGTCAAGCAATAGAAAGAGCAGGCGGAGAAAGCATTCACATACTTGAATGGGTTAGTCCTATAATTGAAGGAGGAGATATTAAAAACATAGTTGATCCAAGGTTGAAGGGAGAATTCAATATCAATTCAGCATGGAAAGTTGTAGAGATTGCTATGTCATGCATTTTACAAGTTGCTGCAGAGAGGCCAGACATAAGTCAAATATTGACAGGGCTAAATGAATGTCTATCTTTGGAGATGATTCAGACAAATAATGGAAGAGAAAGAGATATAGTTGAAGTTCCTTCTCTATGTATGGAATTAGAATCTTATCCTTCAGCTAGGTAA 2610 0.3556 MRMPLHFLSVLLCVLTIFYLIQAQDQSGFISIDCGLPENTGYAETTTGINYISDAKFIDTGVSIRIPPIGNTVLQQLEHVRSFPSGVRNCYKIDVTNGTKYLIKASFYYGNYDDQNDPPQFDLHFGPNMWDTVKFTNLSRIAASEIIYTPSLDYIQPCLVNTGKGTPFISVIELRTLNNQAYVTYSTKSVLANFFRFDLGSITNLEYRYKDDDYDRVWFPFTWDEMKKLSTNEDILTQNIYKPPGIVMSTAVTPFNESAPIQFSWDSDNLNDQYYSYLHFNEVEKLAENETRAFNITVNGLLMYGPEIPAYRSVDTIFSTVTLTGARKYIFSLNKAGNSTLPPIINAFEVYKLIDFSKSETNQDDVDTITSIKKAYGVARNWEGDPCGPVKYMWEGLNCSIGDSNNPPRVTSLNLSSSGLTGQIVSSISNLSMLQYLDLSNNSLNGPLPDFLIQLQSLKVLNVGKNNLTGLVPIGLLEKSERGSLLLSVDDNDDLCTKESCKKKKSFIALIASLSALLVILLLLLGFWIFKKRKVFMSSNSKKEGSKKSKHQIFSHAEILNITENFKTIIGEGGFGKVYIGILQDQTQVAVKRLSPSSMQGYKEFQSEAQLLAIVHHKNLVSLIGYCDEGEIKALIYEYMTNGNLHQHLLGGNSNILKWNDRLNIAVDAAYGIDYMHNGIKPPIVHRDLKPSNILLDDKMHAKIADFGLSRVFGNDIDSHISTRPAGTFGYLDPECQRTGNISKRNDVYSFGIILFVLITGRQAIERAGGESIHILEWVSPIIEGGDIKNIVDPRLKGEFNINSAWKVVEIAMSCILQVAAERPDISQILTGLNECLSLEMIQTNNGRERDIVEVPSLCMELESYPSAR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01411 869 Pfam Malectin-like domain 32 352 IPR024788 -
Vifa4g01411 869 CDD STKc_IRAK 570 835 - -
Vifa4g01411 869 FunFam Lectin-domain containing receptor kinase A4.3 640 848 - -
Vifa4g01411 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Vifa4g01411 869 Pfam Protein tyrosine and serine/threonine kinase 566 831 IPR001245 GO:0004672|GO:0006468
Vifa4g01411 869 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Vifa4g01411 869 Gene3D Ribonuclease Inhibitor 366 489 IPR032675 -
Vifa4g01411 869 SUPERFAMILY Protein kinase-like (PK-like) 548 831 IPR011009 -
Vifa4g01411 869 SUPERFAMILY L domain-like 380 476 - -
Vifa4g01411 869 FunFam Leucine-rich repeat receptor-like protein kinase 541 639 - -
Vifa4g01411 869 FunFam Leucine-rich repeat receptor-like kinase 364 498 - -
Vifa4g01411 869 PANTHER OS07G0107800 PROTEIN-RELATED 30 837 - -
Vifa4g01411 869 SMART serkin_6 564 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01411 869 Gene3D Transferase(Phosphotransferase) domain 1 640 855 - -
Vifa4g01411 869 Gene3D Phosphorylase Kinase; domain 1 536 639 - -
Vifa4g01411 869 ProSiteProfiles Protein kinase domain profile. 564 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01411 Vifa-Chr4 418841395 418871109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01411 14 840 Receptor kinase-like Gene Family AT1G05700 46.145 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa4g01411 Malectin_like 1.4e-106 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01411 - - mtr:25500366 1107.05