Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01407 ATGTCGGCACCGGGAGTCGGAATGTTGGACGGCGGAGTCCCAACGGCGCAACCACCCGGAACAGACATGACCGGAATATGCTTCAGAGACCAGCTATGGCTGAACACTTACCCTCTCGATCGTAACCTCGTCTTCGATTACTTCGCTCTGTCACCGTTCTACGACTGGACTTGCAACAACGAACAAATTCGAATGCGATCTCTTCACCCACTCGATCCCTCTCAACTCACGAAAATGACTGGTATAGAGTATGTGCTGAGTGAAGTTATGGAACCTCACCTTTTCATTATAAGGAAACAGAAGAGGGATAGCCCTGATAAAGTTACTCCAATGCTTGCTTATTACATCTTGGATGGTTCAATCTATCAATCTCCGCAGTTATCCAATGTTTTTGCTGCTAGAGTTGGAAGGGCACTTTATTATATTCAAAAGGCATTTACTACAGCTGCCTCTAAGTTGGAAAAGATTGGATATGTTGATACTGAGAAAGAGACTACAGTGCCGGAACCGAAGGCCGCTAAGGAGACAATTGACTTAAAAGAAATCAAACGAGTGGATCATATTCTTGCATCTTTGCAACGCAAGCTTCCGCCAGCTCCGCCTCCACCACCATTTCCAGAAGGATATGTTCCGCCTTCAACAGCAGAAACTGAGAAAGGCCCTGAAACTCAGGAAGCAACTGAGTCGCAAGCACCTACTGTTGATCCAATAATTGATCAAGGACCTGCAAAAAGAATGAAATTTTGA 747 0.4538 MSAPGVGMLDGGVPTAQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQIRMRSLHPLDPSQLTKMTGIEYVLSEVMEPHLFIIRKQKRDSPDKVTPMLAYYILDGSIYQSPQLSNVFAARVGRALYYIQKAFTTAASKLEKIGYVDTEKETTVPEPKAAKETIDLKEIKRVDHILASLQRKLPPAPPPPPFPEGYVPPSTAETEKGPETQEATESQAPTVDPIIDQGPAKRMKF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01407 248 FunFam Mediator of RNA polymerase II transcription subunit 6 20 149 - -
Vifa4g01407 248 PIRSF MED6_meta/plant 12 248 IPR016820 GO:0003712|GO:0006357|GO:0016592
Vifa4g01407 248 MobiDBLite consensus disorder prediction 217 234 - -
Vifa4g01407 248 Pfam MED6 mediator sub complex component 26 151 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vifa4g01407 248 PANTHER MED-6-RELATED 15 248 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vifa4g01407 248 Gene3D Mediator complex, subunit Med6 20 149 IPR038566 -
Vifa4g01407 248 MobiDBLite consensus disorder prediction 192 248 - -
Vifa4g01407 248 MobiDBLite consensus disorder prediction 195 210 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Vifa4g01407 Med6 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01407 K15128 - gmx:100792248 419.853