Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01399 ATGGATGATCTGAATTGGGATGGCTCGGATGTATTGGAAGAGAGCGTGCGAATCTTGTGGAATTCTCAGCAGCAACAAAACTTTGAAGGATGCTGCTACAACAAAACAAACTCTCTTACTCATCAAATACAAGAGATGCATAAAGTTGAAATTGATCATAGTGCATATTCAAATTCTGAAAGAGTGATTATGCCAAGTAAAAATCTGTTACAGCATGCAACAACCATGACAGTGAAATCAAAAGCTGGATCCAGCTGGGAAGAGCCTTTAGTGCATCAATCAGATCAATCCCTTTTAGTCAATAGACCTTACAACATGCCAGATTTCAACTTGGCCCACCAACAACAACAACAACTCAAATTTAACAACTCTTTTGATTGTTTGCTTTCAGATACTAATAGCAACACTGACACTTCTGTTGAAAATGATGATGGTGGAATTTCAAAGTTGTTTTCTGACTGCAGAAATTTATGGAGCTTCAATTATGTCAGTCCTACATCCTCATCCGGTGAAACCGATAGTAATGTTTCAAATTGTGAAGCACTGACACAAACACGAGTATCAAACAAACCTTCAATCAGAAGTGTCGGTTTAAATGGTACAAGTTACAAGGCGCGTTCTATTAGAAGTGTCGGTTCAAATGGTAAAGGGCATAAAACACTGACACAGATTAAGACATCAGATACATCTTTGATCAGACGAGTTGGTAACAAAGACATGCGGTGTCCACTCAATATTGAACTAGACGAAACAACGTCGGATCAATACATCAATGAAAGAAAAGCAATAAAATCAAGTACTATTCTTAATTCCTCATCTCTTGAAGGTGGTTTTAGCCTTACCATTGATAAACCACCAAAAAGCAAGAAACCAAGATCTGACAAAGGACCTTATTCAACAAACATAAATTTCCAACAACCAAATTCATCATCATCATCATCAATATGCTGTTCATCCTCAACCGAAGAGCCTGACCGAGAAGCAATAGCGCAAATGAAGGAAATGATGTATAGAGCAGCAGCATTTAGGCCAGTGAATTTTGGAATCGATGACATCGATGTGATTGAAAAAAAGCCTAAGAGAAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGTTGCAAGGCAAAGAAGGGAAAAAATAAGCGATAGGATTAGGGCTTTGCAAAAGATAGTACCTGGTGGAAACAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAATTAAGGCACTTGAAAGTTTTGGTAACAAAGTTAATGCTATGGATTGTAATAATCCAACTAGTATTGCTTTCTCTTTTAATCCTTCTTTTTCCATGCAAATGGTTCCTACTAGTTACAATCATCATTCACAGGGTTGA 1392 0.3728 MDDLNWDGSDVLEESVRILWNSQQQQNFEGCCYNKTNSLTHQIQEMHKVEIDHSAYSNSERVIMPSKNLLQHATTMTVKSKAGSSWEEPLVHQSDQSLLVNRPYNMPDFNLAHQQQQQLKFNNSFDCLLSDTNSNTDTSVENDDGGISKLFSDCRNLWSFNYVSPTSSSGETDSNVSNCEALTQTRVSNKPSIRSVGLNGTSYKARSIRSVGSNGKGHKTLTQIKTSDTSLIRRVGNKDMRCPLNIELDETTSDQYINERKAIKSSTILNSSSLEGGFSLTIDKPPKSKKPRSDKGPYSTNINFQQPNSSSSSSICCSSSTEEPDREAIAQMKEMMYRAAAFRPVNFGIDDIDVIEKKPKRKNVKISNDPQTVVARQRREKISDRIRALQKIVPGGNKMDTASMLDEAANYLKFLRSQIKALESFGNKVNAMDCNNPTSIAFSFNPSFSMQMVPTSYNHHSQG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01399 463 CDD bHLH_AtIND_like 367 424 - -
Vifa4g01399 463 Gene3D - 370 433 IPR036638 GO:0046983
Vifa4g01399 463 Pfam Helix-loop-helix DNA-binding domain 376 415 IPR011598 GO:0046983
Vifa4g01399 463 MobiDBLite consensus disorder prediction 275 325 - -
Vifa4g01399 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 415 IPR011598 GO:0046983
Vifa4g01399 463 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 132 453 IPR045843 GO:0003700|GO:0006355
Vifa4g01399 463 SMART finulus 372 421 IPR011598 GO:0046983
Vifa4g01399 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 425 IPR036638 GO:0046983
Vifa4g01399 463 MobiDBLite consensus disorder prediction 295 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01399 Vifa-Chr4 417146074 417147465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01399 273 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 57.292 6.17e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01399 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01399 - - psat:127076443 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01399 4 417146074 417147465 Vifa4g01399 4 417146074 417147465 ECH
Vifa5g00255 5 35114380 35115603 Vifa4g01399 4 417146074 417147465 PCT