Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01391 ATGTCGACCGTTCCGGGGCCACTCGTATGGGAGATCGTGAAGAAGAACAACTCCTTCTTGGTCAAAGAGTTCGGAAATGGCAACCAGAGCGTTCAATTCAGTAGAGAGAGCAACAACCTCTACAATCTCAACTCTTACAAGTTCTCTGGATTGGCAAACAAGAAAACTGTTGCTATTCAGGCGGCTGGTAAAGATCAATCTGTGTTGTTAGCTACAACGAAGCCGAGGAAACAGAATAAGCCTTCTGTTTTGTCTCAGAGATCAGTGATGAAGAAGGAGTTCCGCAGAATGGCAAAGGCCGTTCAAAATCAGGTGGGAGACAATTACTATAGGCCTGATTTAAAGAAGGCAGCTCTTGCAAGGTTGAGTGCAGTTCACAGAAGCCTCAAAGTTGCCAAATCTGGCCTTAAGAAGAGGAATAGACACGCTTAA 432 0.4514 MSTVPGPLVWEIVKKNNSFLVKEFGNGNQSVQFSRESNNLYNLNSYKFSGLANKKTVAIQAAGKDQSVLLATTKPRKQNKPSVLSQRSVMKKEFRRMAKAVQNQVGDNYYRPDLKKAALARLSAVHRSLKVAKSGLKKRNRHA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01391 143 Gene3D - 7 133 - -
Vifa4g01391 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Vifa4g01391 143 FunFam 60S ribosomal protein L28 5 133 - -
Vifa4g01391 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 142 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01391 Vifa-Chr4 416045900 416047196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01391 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 7.13e-73 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01391 K02903 - gmx:100499921 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01391 4 416045900 416047196 Vifa5g00260 5 37113076 37114952 ECH
Vifa4g01391 4 416045900 416047196 Vifa4g01391 4 416045900 416047196 ECH
Vifa5g00260 5 37113076 37114952 Vifa4g01391 4 416045900 416047196 PCT