Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01381 ATGCAAGACCCAACAACATTTCAACCCATGAAACCAAATTTCCCTGAACAAGAACAACTCAAATGTCCACGTTGTGAATCAAACAACACAAAATTTTGTTACTACAACAACTACAATCTCTCACAGCCACGCCATTTTTGCAAGAACTGTAAAAGGTATTGGACCAAAGGTGGTTCTTTGAGGAACATTCCTATTGGTGGTGGAACACGAAAAGTCACAAAACGTTCATCAAATCCCAAACGCTCAACAACTTCATCTTCATCTTCTCCATCACCATCATCAATCACTTCTTCAGCTCAAGCTTCTTCAGTTCAAGTTTCTTCAGTTCCAGACTCCGACCCGACCCAGATTCGTATTGACCCGGTTGAACCAAGTTTTGGTGGAGGGAGCTTTAGTTCGCTTCTTGCATCAACTGAGCGGTTCGGGAACCTTTTCGAGGGTCTGAGTTCAAATGGGTCGGGTTTAAAAATGATGGAAATGGGTGAATTCGGGGAGAATTTGAACATTGACCCGGTTGTGAATTCGGATTCGGGTCATACTCATAACGCGAATGGTAGAAATGGTGAATCAGAGATCTTTCTTGGTTTGCAAAATGGTGACACAAGTTGTTGGAATGGGAACCATGGTTGGTCTGATCTTGCAATATACACACCTAGTTCAACTTATCAGTAG 672 0.4241 MQDPTTFQPMKPNFPEQEQLKCPRCESNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPIGGGTRKVTKRSSNPKRSTTSSSSSPSPSSITSSAQASSVQVSSVPDSDPTQIRIDPVEPSFGGGSFSSLLASTERFGNLFEGLSSNGSGLKMMEMGEFGENLNIDPVVNSDSGHTHNANGRNGESEIFLGLQNGDTSCWNGNHGWSDLAIYTPSSTYQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01381 223 MobiDBLite consensus disorder prediction 61 124 - -
Vifa4g01381 223 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 150 IPR045174 GO:0003700|GO:0006355
Vifa4g01381 223 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vifa4g01381 223 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vifa4g01381 223 MobiDBLite consensus disorder prediction 78 114 - -
Vifa4g01381 223 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01381 Vifa-Chr4 414046883 414047554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01381 5 145 C2C2-Dof Transcription Factor Family AT1G51700 54.225 1.01e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa4g01381 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01381 - - qsu:112018035 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01381 4 414046883 414047554 Vifa4g01381 4 414046883 414047554 ECH