Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01374 ATGTCCTACTTTGACAACTCAATAGGTGAAATTTCTGAGCCACTGCTAGCTCAAAAAGTTGAAACAAAACAAACAGGAATAGGTCATGCTACTTTTCTCAGTAGATTGTTTTTCTCTTGGATTAATTCTTTACTCAGTTTAGGTTACTCAAAGCCACTAGACCTTCAAGACATTCCTTCTCTTGTTCCTCAAGATGAAGCAAACATGGCATATAGAAAATTTGTTCATGCTTGGGATTCACTTGTTAGAGAGAGGACTAAGAACAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTTCTTAAAAGAAAACATATTAATAGCATTTTATGCATTAATCAGAACTATTTCTGTTGCAGTTTCACCTCTAATACTGTATGCTTTTGTTAACTACTCAAATAGAACTGAGGTAGATCTTAGAGAAGGTTTTTCAATAGTTGGTTTTCTTATTCTCGCCAAAGTCGTCGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCGGCGCTGATGGTGGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGGACGAGACACTCGGCCGGCGAGATTGTGAACTACATTGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATTTAACGTGGACTTCTGCATTGCAACTTGTTCTTTCCATTGTTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTCCCTATTCTTATATGTGGACTTCTCAATGTACCATTTGCAAGGATCCTGCAAAATTGTCAGTCACAGTTTATGATTGCACAGGATGAACGTCTTCGATCCACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCTATTCGTTACGCGATAAAGAGTTTGTATTGTTGTCTAAGGCACAGAAACTGAAAGCTTTTGGATCATTTCTTTATTGGATGTCTCCTACAATGATATCTGCTGTTGTTTTCCTTGGATGTGGTGTTTCCAAGAGTGCACCATTGAATGCTGAAACCATTTTCACAGTTCTTGCAACATTGAGGAACATGGCAGAACCTGTTAGAATGATCCCTGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTTGACCGTCTCAATAACTTTTTGCTTGATGAAGAACTAAACAAAGATGATAGTGAAAGAAACATGAAGCAATGTTCGGTTAATGCTGTGGAAGTTCAAGATGGCTACTTCATTTGGGATCATGAATCTGTTTCTCCAACCTTAACACATGTGAATTTAGAAATCAAACGGGGACACAAAATAGCTGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGTATGCAATACTTGGAGAGATTCCCAAGATTTCAGGAACTGTTAATTTAGGTGGCAATCTTGCCTATGTTTCTCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCATGCCAATGGACAGAACAAGATATGAGAAAGCAATTAAAGCTTGTGCCCTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTTCAGAAATTGGTCAGAGAGGGATTAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGACATCTATCTTCTTGATGATCCTTTCAGTGCAGTTGACGCACATACAGCTGCAATACTATTCAATGACTGTGTCATGACTGCTTTAAGATCGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCGGGTAGTTATGAGAATCTCCTGAGAACAGGAACGGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATCACTGAGTTGAATCAAGATAATGAAAATAAAAGAGATTTTGAAAATGAGGTTTTTTCTAATCCTCAAGACTCTCAAGGTTTTCATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGTACAACTTACACAAGAGGAAGAAAAAGTGACTGGTAATGTTGGATGGAAGCCATTTTGGGATTATATTAATTATTCCAAAGGGTCATTCATGCTATGTTTGATAGTGTTAGCACAATCTGTGTTTATAGCTTTGCAAACTGCATCCACCTATTGGCTTGCAATAGCCATTGAGATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATGCATTCATTTCTTTTGCTAGTGCTGCTTTTATATATATAAGAACTTACTTGACTGCGCTTTTGGGATTAAAAGCTTCTACTGTTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTCGATATACCTTATTCCATCACCTTTGTAGCATCTATATCAATTGAAATTTTGGTGGTTATTTCTATAATGGCTTCAGTCACATGGCAAGTTCTCATTGTGGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGAAATATTATCAAGCCACTGCAAGGGAGCTAACTCGGATCAACGGAACCACCAAAGCTCCAATCATGAATTTTGCAGCTGAGACATCACTTGGAGTGGTCACTGTAAGAGCATACAACATGGCAGACAGATTTTTCAAAAATTACTTAACACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCCAATGTGGCAATGGAATGGGTAGTTTTAAGGATTGAAGCAGTTCAAAATTTGACTGTCATCGCTGCAGCTTTGTTGCTTATTCTACTTCCTCAAGGATATGTATCGCCAGGCCTTGTGGGACTATCTTTTTCCTATGCTTTTACTTTGACAGGAGCACAGATATTTTGGACTAGATGGTTTTCCAACTTATCAAACTACATTATCTCTGTAGAAAGAATCAAGCAATTCATTCACATACCAACTGAGCCTCCTGCCATTGTGGAGGATAACCAACCGCCATCTTCATGGCCTTCCAAGGGAAAGATTGATCTTCAAAGCGTGGAGGTTAGGTATCGCCCTAACGCTCCATTAGTCCTTAAGGGAATCACATGTACATTTAAAGAAGGGAGTAGGGTAGGAATTGTTGGAAGGACTGGAAGTGGGAAAAGTACACTTATAAGTGCTTTGTTCCGCTTAGTTGAGCCTTCAAGAGGTGATATTCTCATTGATGGAATAAACATTTGCTCAATGGGGTTGAAGGATTTGAGAACAAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAAGGAAGCATTAGGACAAACCTAGACCCTCTAGACATGTACTCAGATGATGAAATATGGAAGGCTGTAGAGAAATGTCAGCTAAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGTTTGGGACAAAGGCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACCGAATTCTTGTTCTGGATGAAGCTACTGCATCCATTGACTCTGCTACAGATGCCATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACTGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGTCATGGTCATGGTCCTCTGTTATGGGAAAGTGGTGGAATATGATGAGCCTTCAAAGCTAATGGACAACACCAACTCTTCATTCTCTAAGTTGGTAGCTGAATATTGGTCTAGTTGCAGTAAGAGTTCCTTCCCAAACATTAGAAGACAATGA 3882 0.3836 MSYFDNSIGEISEPLLAQKVETKQTGIGHATFLSRLFFSWINSLLSLGYSKPLDLQDIPSLVPQDEANMAYRKFVHAWDSLVRERTKNNTKSLVLWSIVRTFLKENILIAFYALIRTISVAVSPLILYAFVNYSNRTEVDLREGFSIVGFLILAKVVESLSQRHWFFNSRRSGMKMRSALMVAVYQKQLKLSSSARTRHSAGEIVNYIAVDAYRMGEFPWWFHLTWTSALQLVLSIVILFGVVGIGALPGLVPILICGLLNVPFARILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVYSLRDKEFVLLSKAQKLKAFGSFLYWMSPTMISAVVFLGCGVSKSAPLNAETIFTVLATLRNMAEPVRMIPEALSIMIQVKVSFDRLNNFLLDEELNKDDSERNMKQCSVNAVEVQDGYFIWDHESVSPTLTHVNLEIKRGHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNLGGNLAYVSQSSWIQSGTVQDNILFGMPMDRTRYEKAIKACALDKDINDFSHGDLSEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRSKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYENLLRTGTAFELLVSAHKDTITELNQDNENKRDFENEVFSNPQDSQGFHLTKNQSEGEISSIKGPIGVQLTQEEEKVTGNVGWKPFWDYINYSKGSFMLCLIVLAQSVFIALQTASTYWLAIAIEIPKVTNATLIGVYAFISFASAAFIYIRTYLTALLGLKASTVFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASISIEILVVISIMASVTWQVLIVAVPAMVASIYIQKYYQATARELTRINGTTKAPIMNFAAETSLGVVTVRAYNMADRFFKNYLTLVDTDASLFFHSNVAMEWVVLRIEAVQNLTVIAAALLLILLPQGYVSPGLVGLSFSYAFTLTGAQIFWTRWFSNLSNYIISVERIKQFIHIPTEPPAIVEDNQPPSSWPSKGKIDLQSVEVRYRPNAPLVLKGITCTFKEGSRVGIVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSMGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLDMYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSVMVMVLCYGKVVEYDEPSKLMDNTNSSFSKLVAEYWSSCSKSSFPNIRRQ 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01374 1293 FunFam ABC transporter C family member 5 694 1023 - -
Vifa4g01374 1293 SUPERFAMILY ABC transporter transmembrane region 713 1024 IPR036640 GO:0005524|GO:0016020
Vifa4g01374 1293 Pfam ABC transporter 1059 1207 IPR003439 GO:0005524
Vifa4g01374 1293 FunFam ABC transporter C family member 3 1025 1277 - -
Vifa4g01374 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 643 IPR027417 -
Vifa4g01374 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1273 IPR027417 -
Vifa4g01374 1293 SMART AAA_5 449 622 IPR003593 GO:0016887
Vifa4g01374 1293 SMART AAA_5 1068 1259 IPR003593 GO:0016887
Vifa4g01374 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 107 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01374 1293 FunFam ABC transporter C family member 10 90 404 - -
Vifa4g01374 1293 SUPERFAMILY ABC transporter transmembrane region 95 402 IPR036640 GO:0005524|GO:0016020
Vifa4g01374 1293 Gene3D - 430 672 IPR027417 -
Vifa4g01374 1293 Gene3D ABC transporter type 1, transmembrane domain 82 404 IPR036640 GO:0005524|GO:0016020
Vifa4g01374 1293 Gene3D ABC transporter type 1, transmembrane domain 696 1023 IPR036640 GO:0005524|GO:0016020
Vifa4g01374 1293 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 29 1279 - -
Vifa4g01374 1293 CDD ABCC_MRP_domain2 1040 1260 - -
Vifa4g01374 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 730 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01374 1293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1276 IPR003439 GO:0005524
Vifa4g01374 1293 ProSitePatterns ABC transporters family signature. 547 561 IPR017871 GO:0005524|GO:0016887
Vifa4g01374 1293 CDD ABC_6TM_ABCC_D1 108 396 IPR044746 GO:0140359
Vifa4g01374 1293 Pfam ABC transporter 440 574 IPR003439 GO:0005524
Vifa4g01374 1293 FunFam Multidrug resistance protein associated1 401 665 - -
Vifa4g01374 1293 CDD ABC_6TM_ABCC_D2 724 1017 IPR044726 GO:0140359
Vifa4g01374 1293 Gene3D - 1025 1277 IPR027417 -
Vifa4g01374 1293 Pfam ABC transporter transmembrane region 731 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01374 1293 Pfam ABC transporter transmembrane region 108 368 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa4g01374 1293 CDD ABCC_MRP_domain1 422 622 - -
Vifa4g01374 1293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 645 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01374 Vifa-Chr4 412565991 412570926 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01374 409 686 Calmodulin-binding Proteins AT2G36910 26.087 2.31e-19 92.8