Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01358 ATGGGACTGTTGCTAATTTTGCTGCTAATAAAGGTGCATTTTGTCTTCAGTGCTAAACAGGTTCATGAATATTCAGACACCAACCTACCACATTTCAGATTCAGTGGTCATGTAAGTATTGCAGTCCCACCAACAATATCATCTTCTTATGTTTCTTCAAGTATTGCACAGCCACCTGCCAAGTCATCGTCGAGCGTTCCTGCTAGTATTGCATTTCCACCTTCCAAGTCAACTGCCCGAGCTTCTACAAAGAAACCGAAACATGATTCTTTGGATTCTCCAATATCACATCATAAGCATCACTATACTGGAAAAAAGAACCGCAATCCAACTCTAGGATCGACCTCCACAACCCAAGCGCCTACTTACAGCAATCAAGGTCCTTCATTCCTCAAACCACAACCTCCTTTCTCTTCACCAAAGAGCAAGTTTATCCATGCACCTGTGCCCGCACCTGCACCATCACCGGCATTTCGGTCAGGCCACCTAAATGTTCCGTCTCTTCCACCTAGAATTTCACCTATAGGTTCATCATTGAACAAGATTAAGACTCCACCGCCAGCATATGCATTGGTTCTTCCCCCTCCACCTCCTAATAAAGATTGTTTATCCGTTACTTGCTCAGAGCCGTTGACATACACACCTCCTGGATCACCTTGTGGATGTGTATGGCCACTTCAAGTTAAAATCCGTGTCAGCATTGCAACATACAAGTGTTTTCCTCTGGTTTCAAAGCTAGCTAATGAAATTGCAGCGAGTGCTATGCTGAACCATACGCAAGTTCGTATCGTGGGAGCTGATGCAACTAATCAGCAACTAGAGAAAACCGATATTATCATTAACCTGGTACCAAAAGGAGTAAAATTTGATGATACCGTCGCATTATTAATATACAAGAAATTCTGGCACAGGGAGATTCTAATAGATGATTCCCTCTTCGGTGCTTATGAAGTACTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAATTCCCTCGGGTGTTTCTAGTATAGATGATGGGCCGAATCGTGGTCGTGACAACAATGGAATGATGATGAAACCTTTAGGAGTAGCTATACCAAAGAAAAAGGAAGAAGGGAGCGACGGAAGAATGGTTTTTATAACTGCGTTGTCATCAGTTACCGCTTTTGTACTATTCCTTGGACTTGCTTGGCTTTGTCTGTTGAAATACAGTTCTTGTATTCATCAACAGGAAAAAGCTTCAGATAGCTTAATGTCATCCTCTTCAAAACATTTAAGGGCTGCCGGGCCATTAAATCATGGGATCGTGTCGGGATCTGGATCACGTTCCTTCGGTTCGGGAACAATAGCATTTACAAGATCTGCCAAGAATTTTTCCTTGAATGACTTAGAGAAAGCAACAAATAACTTTGACTCTTCTAGAATATTAGGAGAAGGTGGCTTTGGACTTGTTTACAAAGGTATTCTGAATGATGGGAGGGACGTAGCAGTGAAGATTCTCAAAAGAGATGATCAGCGTGGTGGCCGTGAGTTCTTGGCAGAAGTTGAGATGCTTGGCCGCCTACACCATAGAAATTTAGTTAAACTGATAGGTATATGCATAGAGAAAAAGACTCGTTGCCTAGTGTATGAACTTGTCCCTAATGGAAGTGTGGAATCCCACTTGCATGGTGCTGACAAGGAAAGTGATCCATTGGATTGGAGTGCCCGGATGAAAATTGCTCTTGGTGCAGCTCGAGGATTGGCTTATCTGCATGAAGATTCCAATCCGTATGTCATACATCGGGACTTCAAGTCCAGTAACATTTTATTGGAACATGATTTTACACCCAAGGTTTCAGATTTTGGATTGGCTAGAACAGCACTAGAAGAGGGAAACAAGCACATCTCCACACATGTCATGGGTACATTCGGCTACTTAGCTCCTGAATACGCAATGACAGGCCATCTTCTCGTCAAAAGTGATGTTTACAGTTACGGAGTTGTACTCCTTGAGCTCCTAACCGGTAGAAAGCCTGTGGATTTGTCCCAACCACCAGGTCAAGAAAATCTCGTGACTTGGGTCCGTCCACTTCTCACAAGTAACGAAGGTTTGCAAACAATCATAGACCCAGATGTAAAGCCAAATGTATCTCTCGATACAGTGGTAAAAGTTGCAGCAATAGCATCCATGTGCGTGCAACCAGAAGTATCTCAACGGCCTTTCATGGGGGAAGTTGTTCAAGCCTTGCAGCTTGTATGCAGTGAGTTTGAGGAAACAAATTATATAAAATCAAGTAACTTTCACGAAGGAGATCTTGTAGTAACTAATACGGAAGGGAAGTTTTTGGAGGTTTCAGATGAGAGATTGGAGTTTTCGGAGTGTCAAAAATCAATTTATGGCTATCAATCCGGTGAAGAAAATGTAAGATTATCAGCTTCTGAGCTGCTCAGTACTTCAGCCCGGGAAGTTGAGTCATTCAGGAGGAAATCAACTTCGGGGCCTATTACCACCGAGAAGAAAAGACATTTCTGGCAAAATTTGAGAGGTTTGTCTAAAGGTAGCACAAGTGATCATGGATTTTCAACTAAACTATGGCCTGGATCTCATTAA 2583 0.427 MGLLLILLLIKVHFVFSAKQVHEYSDTNLPHFRFSGHVSIAVPPTISSSYVSSSIAQPPAKSSSSVPASIAFPPSKSTARASTKKPKHDSLDSPISHHKHHYTGKKNRNPTLGSTSTTQAPTYSNQGPSFLKPQPPFSSPKSKFIHAPVPAPAPSPAFRSGHLNVPSLPPRISPIGSSLNKIKTPPPAYALVLPPPPPNKDCLSVTCSEPLTYTPPGSPCGCVWPLQVKIRVSIATYKCFPLVSKLANEIAASAMLNHTQVRIVGADATNQQLEKTDIIINLVPKGVKFDDTVALLIYKKFWHREILIDDSLFGAYEVLYVHYPGLPPSPPSIPSGVSSIDDGPNRGRDNNGMMMKPLGVAIPKKKEEGSDGRMVFITALSSVTAFVLFLGLAWLCLLKYSSCIHQQEKASDSLMSSSSKHLRAAGPLNHGIVSGSGSRSFGSGTIAFTRSAKNFSLNDLEKATNNFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLGRLHHRNLVKLIGICIEKKTRCLVYELVPNGSVESHLHGADKESDPLDWSARMKIALGAARGLAYLHEDSNPYVIHRDFKSSNILLEHDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSNEGLQTIIDPDVKPNVSLDTVVKVAAIASMCVQPEVSQRPFMGEVVQALQLVCSEFEETNYIKSSNFHEGDLVVTNTEGKFLEVSDERLEFSECQKSIYGYQSGEENVRLSASELLSTSAREVESFRRKSTSGPITTEKKRHFWQNLRGLSKGSTSDHGFSTKLWPGSH 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01358 860 MobiDBLite consensus disorder prediction 57 80 - -
Vifa4g01358 860 MobiDBLite consensus disorder prediction 82 98 - -
Vifa4g01358 860 CDD STKc_IRAK 473 741 - -
Vifa4g01358 860 FunFam Receptor-like serine/threonine-protein kinase ALE2 543 758 - -
Vifa4g01358 860 SUPERFAMILY Protein kinase-like (PK-like) 448 741 IPR011009 -
Vifa4g01358 860 Gene3D Phosphorylase Kinase; domain 1 444 542 - -
Vifa4g01358 860 PANTHER OS01G0750732 PROTEIN 194 757 - -
Vifa4g01358 860 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Vifa4g01358 860 FunFam receptor-like serine/threonine-protein kinase ALE2 440 542 - -
Vifa4g01358 860 MobiDBLite consensus disorder prediction 107 132 - -
Vifa4g01358 860 ProSiteProfiles Protein kinase domain profile. 467 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01358 860 MobiDBLite consensus disorder prediction 841 860 - -
Vifa4g01358 860 ProSitePatterns Protein kinases ATP-binding region signature. 473 495 IPR017441 GO:0005524
Vifa4g01358 860 Gene3D Transferase(Phosphotransferase) domain 1 543 809 - -
Vifa4g01358 860 MobiDBLite consensus disorder prediction 57 150 - -
Vifa4g01358 860 Pfam Protein tyrosine and serine/threonine kinase 470 740 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01358 Vifa-Chr4 406111907 406116536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01358 199 855 Receptor kinase-like Gene Family AT5G56890 55.852 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vifa4g01358 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01358 - - gmx:100814040 1223.38