Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01355 ATGAACCCGAAAAACAATAACACCACTCAAGCTTGTGCTGCATGCAAATACCAGCGTAGAAAATGTGCACCTGATTGCATCTTAGCACCTTATTTCCCTCATGATCGTCATAGACAATTCATCAATGCTCACAAATTGTTTGGTGTTAGCAACATCAACAAAATTATTAAGTATCTTGATCCTCCTCTTAAGGATCAAGCCATGAGAACGATTATTTTTCAATCTGATATGCGGGCCAATGATCCTGTTGGCGGTTGTTATAGGTATATTCAAGACCTTCAAGCTCAGATTGAATATCATAAAAATGAACTCGATCTTGTTCATCAACAGCTCGCGATTCTCCGAGCTCAACAATCTCAACAACAACAACAAGTTAATAATTATGGTGACCAGGTTATTATGAATCAAGATTCTTTGTTAGGGTTCTATAATCCATCAGGATCTCTTGCACCGGCTCATTATCAGTACAATATTCAACCACAACAAGATTTGCCAGAAATACAAGAACCGGAACAAGAACAATACATTATGATGCAAGAAAGTAATAGTAGTAGTATTAATAGTTCTACTCCTTTGCAAAATGTTCATAATAATTGGGGGGCTATGCAAAATTCTATTTCTTTATCATCTTTATCATTGCATGGACAAAGTAGCAATGCTAGTGAAGAATATGATCATAAGCCAATTCTAGAAATTCCTTGTGATGAAAGAAATGAATTAGGGTTTGATTCCGGAGAAATACTTCACCACGGTGATGAAGCGGTTTTGTATAAGATAGATGATAATGGAGTAATTAAAGCAGAAGGTGATTACATTCAACAAGTTGAAGGTGAAGGTCTAGCACAAGATCATGATCTGAAAGGTGCTGCAACATTGTTTACTTTGACAAATTGTAATAGTTATGATCAAAGTGTTAATTGA 921 0.3572 MNPKNNNTTQACAACKYQRRKCAPDCILAPYFPHDRHRQFINAHKLFGVSNINKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYRYIQDLQAQIEYHKNELDLVHQQLAILRAQQSQQQQQVNNYGDQVIMNQDSLLGFYNPSGSLAPAHYQYNIQPQQDLPEIQEPEQEQYIMMQESNSSSINSSTPLQNVHNNWGAMQNSISLSSLSLHGQSSNASEEYDHKPILEIPCDERNELGFDSGEILHHGDEAVLYKIDDNGVIKAEGDYIQQVEGEGLAQDHDLKGAATLFTLTNCNSYDQSVN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01355 306 Coils Coil 90 110 - -
Vifa4g01355 306 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vifa4g01355 306 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vifa4g01355 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01355 Vifa-Chr4 404188939 404189942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01355 10 240 AS2 family AT3G13850 48.523 5.93e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g01355 LOB 6.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01355 - - cam:101515615 399.053