Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01354 ATGAACACCAAAAACAATAACACCACTCAAGCTTGTGCTGCATGCAATTACCAACGTAGAAAATGTGCACCTGATTGCATCTTAGCACCTTATTTCCCTCATGATCGTCATAGACAATTCATCAATGCTCACAAATTGTTTGGTGTTAATAACATCAACAAAATCATTATGTATCTTGATCCTCCTCACAAGGATCAAGCCATGAGATCGATTATTTATCAATCTGATATGCGAGCCAATGACCCTGTTGGTGGGTGTTACAAATATATTCAAGATCTTCAAGCTCAAATTGAATATCATAAAAATGAACTTGATCTTGTTCATCAACAACTCGTCATTCTCCGAGCTCAACAATCTCAACAACAACAGCAACAACAAATTAATAATTATGGTGATCAAGTTATTATGAATCAAGATTCTTTGTTAGGATTCTATAATCCATCGGGATCTCTTGCCCCGACTCATTATCCTTACAATATTCAAAATCAAGATGTGCCACAATTACAAGAACCGAAACAAGAACAATACATTATGATGCAAGAAAGTAATAGTAGTAGTATTAATAGTACTACTCCTTCGCAACAATATGTTAATAATTGGGAGTTATGCAAAATTCTACTTTATCATCTTTATCATTGCATGGACAGAGCAGGGTTGATTCCGAAGAAATACTTCATCACAGGGCCTAGGAGAAGTTCTAATGGCGATAATGAGATGAGACATCCCAAATCAATATCATCAGGTAATGAAGGCGAGGGATCACAATATCAAAATACCTTGTCGTCAAAATGGTGCATTGATGGTGAACACATACCAAATAATATAATGGAAAAGACAGAGAACTATATTAAAAGTCTTGTAGTTACACGAAAAAAATCATTCTGA 885 0.3503 MNTKNNNTTQACAACNYQRRKCAPDCILAPYFPHDRHRQFINAHKLFGVNNINKIIMYLDPPHKDQAMRSIIYQSDMRANDPVGGCYKYIQDLQAQIEYHKNELDLVHQQLVILRAQQSQQQQQQQINNYGDQVIMNQDSLLGFYNPSGSLAPTHYPYNIQNQDVPQLQEPKQEQYIMMQESNSSSINSTTPSQQYVNNWELCKILLYHLYHCMDRAGLIPKKYFITGPRRSSNGDNEMRHPKSISSGNEGEGSQYQNTLSSKWCIDGEHIPNNIMEKTENYIKSLVVTRKKSF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01354 294 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vifa4g01354 294 Coils Coil 90 110 - -
Vifa4g01354 294 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vifa4g01354 294 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 169 - -
Vifa4g01354 294 MobiDBLite consensus disorder prediction 228 256 - -
Vifa4g01354 294 MobiDBLite consensus disorder prediction 239 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01354 Vifa-Chr4 404119849 404120890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01354 10 176 AS2 family AT3G13850 54.070 1.33e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g01354 LOB 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01354 - - cam:101515615 248.054