Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01350 ATGGTCAAAGGTTTAATGATGTTCCAACAACAACAAGTGGTGGAAGAAAACATGTCAAATTTAACTTCCGCATCTGGTGAAGCTAGTGCTTCTTCGGGTAACAAAACTGAATTTGGAACAAGTAGTAGTTACCAACAACAACATGAACAACAACAACAATACTTGGTTCCTCAAACTCAACCTCAATCTCAAGCAGTGAAGAAAAAGAGAAACCTCCCTGGTAACCCAGACCCTGATGCTGAGGTTATAGCTATGTCACCAAAGAGTCTACTAGCGAAAAACCGATTCATATGTGAGATCTGCAACAAAGGTTTCCAACGAGATCAAAATCTTCAGCTTCACAGAAGAGGCCACAACCTACCATGGAAGTTGAAACAAAGAACAAGCAAAGAAATCAGAAAGAAAGTAAAACACGGTGAGAAGAAGTGGAAATGTGAGAAGTGTTCAAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACATGTGGAACAAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACACATAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGAGTTATCACAAATAAGACAATTCCACATTTACCCTCAACACAATCACCATCATCTTCTCATCATCATCATCACATGATAAATCTACAAACCCAATTCAATAATCATACTCATAATCATAATCATAATCAACATCAAGAACAACAAGAGATTCATCATAATTTTCCATTATTGAAAAAAGAACAACAACATCAACAACATCAAAGTTTTAATCTTTCAGAAATTCCACCTTGGCTTGGCCCACCACCAAATGTTGGTGAAATCTCATCATCAATATTCTCTCAAACACAACAAGAAAACCCTAACCCTAATCTTGCTCATGTTCATGGGCCCACATTGCCTCCTTACCAAACAGTACCTTCCCCACACATGTCAGCTACTGCATTATTGCAGAAAGCAGCTCAGATGGGTGCAACTATGAATAGAACAGGTTCTGCTTCTTCACCAGCTATGAATGCTATGAATGTTAGGTCCCACCAAGTTGATTCTCTCAACAATGTTTCTTCTGGTCATTTTGGTTTGAATTTGTTATCATCATCATCATCGCCACATGAACATCAACAACATCAACAACAAAACACAACATCCATGGCAACAACAACAACAACAACCTCAACATATCTGAGTAATATTCATGATGTTATGTTTTCTTCTCCGTCTCTTTCTGGATTTGAATCAACTCAGTTTGATGAAATGTTTGGTGGCATTATGAATCCAAAGAAAGATCATCATGAGACACGGTCTAAAACAACTACGAGCGACGACGGTGGAGGCGGTGGAAATGAAGGATTGACTAGAGACTTTTTAGGTCTTAGACCATTGTCTCATAGTGATATACTAAGCATGGCAGGGATTGGAAACTGCATGAATGATGATGAACAAAATCAATCTCAAAAGCCATTATGGCAAGGTTAG 1512 0.3843 MVKGLMMFQQQQVVEENMSNLTSASGEASASSGNKTEFGTSSSYQQQHEQQQQYLVPQTQPQSQAVKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVITNKTIPHLPSTQSPSSSHHHHHMINLQTQFNNHTHNHNHNQHQEQQEIHHNFPLLKKEQQHQQHQSFNLSEIPPWLGPPPNVGEISSSIFSQTQQENPNPNLAHVHGPTLPPYQTVPSPHMSATALLQKAAQMGATMNRTGSASSPAMNAMNVRSHQVDSLNNVSSGHFGLNLLSSSSSPHEHQQHQQQNTTSMATTTTTTSTYLSNIHDVMFSSPSLSGFESTQFDEMFGGIMNPKKDHHETRSKTTTSDDGGGGGNEGLTRDFLGLRPLSHSDILSMAGIGNCMNDDEQNQSQKPLWQG 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01350 503 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vifa4g01350 503 Gene3D Classic Zinc Finger 96 140 - -
Vifa4g01350 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 434 467 - -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 259 303 - -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 373 397 - -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 286 303 - -
Vifa4g01350 503 Gene3D Classic Zinc Finger 141 201 - -
Vifa4g01350 503 FunFam protein indeterminate-domain 12-like 75 142 - -
Vifa4g01350 503 SUPERFAMILY beta-beta-alpha zinc fingers 95 163 IPR036236 -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 435 450 - -
Vifa4g01350 503 SMART c2h2final6 143 163 IPR013087 -
Vifa4g01350 503 SMART c2h2final6 96 118 IPR013087 -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 19 82 - -
Vifa4g01350 503 Pfam Zinc-finger double-stranded RNA-binding 96 118 IPR022755 -
Vifa4g01350 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 137 488 IPR031140 -
Vifa4g01350 503 MobiDBLite consensus disorder prediction 19 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01350 Vifa-Chr4 403527183 403529271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01350 14 489 IDZ Gene Family AT1G55110 44.146 1.21e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g01350 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01350 K25870 - gmx:100785687 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00288 5 43479111 43480888 Vifa4g01350 4 403527183 403529271 PCT