Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01345 ATGGGACATCACTCTTGCTGCAACAAACAGAAAGTGAAAAGAGGTTTATGGTCTCCTGAAGAAGATGAAAAACTCATCAAATACATCACTACTTATGGACATGGTTGTTGGAGTTCAGTTCCAAAACTTGCTGGTTTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGCTTCACTCATTATAGAACTCCATAGCATTCTAGGAAATAGGTGGGCTCAAATTGCGAAGCATTTACCGGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATTAAGAAGAAGATTTTTTCTCATGATATTATTCCATCTTACACCACAATTTCTGATACTCACGCCCTCTACAATATTGGTCCTATGGAAACTTTCTTTCCTAACCCTAATTTGATCCTAAACTTCAATCATCATCGTCATCAAGAAGATCACCTATACCTTCCAACCTCCTCTCAAAATCTACAAGATAACTTTCACCAAATTGATACAAAGGTAGATATCAATAACCATTTGAATGCTAATTTCCTTCACACTCAAAATCCAGTTCCACAAATAGTACAACCAATACCTAATCCTTTACCTTATGAAAATGCATGGCCGTTAAGTTGTGAAACTCTTCATCTAAATCATAATCTATTAGAAAATCAAGTTTCCAAAAGTGATGCCACACCACTTAACAAATTAATGCAACAATATGATCACAACTTAGTTGAACTTGAAACCTTTTTTCCTAAAGTTAGTGATCATAGTTTTGAGGATTATGTTTGTAGCATCCTAGATTCATCTTATTCCAAGGAACATGAAGCTCCAACAAAATTTCAGTGCTATACACCTAGTATTATTTGTCCACAAGATCAAATTCTGGAAGTTAATCAACTGGATTACATCGATGCTCTCATGGCATCATCATATCGACCCTCAAGCAGCCAAATAGTCACAAATCCTATTACTCCTTTAGGATGGAAACATTAA 1026 0.3538 MGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEASLIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKIFSHDIIPSYTTISDTHALYNIGPMETFFPNPNLILNFNHHRHQEDHLYLPTSSQNLQDNFHQIDTKVDINNHLNANFLHTQNPVPQIVQPIPNPLPYENAWPLSCETLHLNHNLLENQVSKSDATPLNKLMQQYDHNLVELETFFPKVSDHSFEDYVCSILDSSYSKEHEAPTKFQCYTPSIICPQDQILEVNQLDYIDALMASSYRPSSSQIVTNPITPLGWKH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01345 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa4g01345 341 SMART sant 13 63 IPR001005 -
Vifa4g01345 341 SMART sant 66 114 IPR001005 -
Vifa4g01345 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vifa4g01345 341 Gene3D - 69 116 - -
Vifa4g01345 341 PANTHER MYB DOMAIN PROTEIN 55 1 229 - -
Vifa4g01345 341 Gene3D - 11 67 - -
Vifa4g01345 341 CDD SANT 17 61 IPR001005 -
Vifa4g01345 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa4g01345 341 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Vifa4g01345 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa4g01345 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa4g01345 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vifa4g01345 341 CDD SANT 69 109 IPR001005 -
Vifa4g01345 341 FunFam Myb transcription factor 69 116 - -
Vifa4g01345 341 FunFam MYB transcription factor 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01345 Vifa-Chr4 399848868 399850169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01345 1 118 MYB Transcription Factor Family AT3G13890 93.220 9.21e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g01345 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01345 K09422 - gmx:100785147 407.142