Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01343 ATGGGTGGTTCAGGAAGCTGGTTTAAATCACTCATTCCTCCCAGAAAGTTCTCCACAAATAATCAAGTTAATGGAAGTGATAAGAGTAAGAGAAAATGGAAGTTATGGAGGAATTCTTCAGAAGTTGATGGATTTGGAAGTTCTATGAAGAAGGGAAATGGTTTTGTTGGTTATGATAAATATTCTTGTTCTTCTTTTGTGGTGAATGAAGAAGCTTTTGCTGCTGCAATGGCTGCTGTGCTAAGAACTCCACATAAAGATTTCTTGGTCATCAAGCAGGAATGGTCTGCCATCCGTATCCAGTCTGCATTTCGAGGCTTCTTGGCAAGAAGGGCTTTGAGGGCTCTGAGGGCATTGGTGAGGCTGCAAGCTATATTTCGCGGCCGGTTAGTGAGAAAACAAGCTGCTGTTACTTTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGAACGCGTGAAGGCGAAGAATGTTAGGAATTCTCCGGAAAAGAAAGCTAAGCAGAAACTATCAAATGGGCAACACAATCAAGCTGATCCTGCTAAACAAGCTGAGAAAGGGTGGTGTGACATACCAGGAACTGTGGAAGATGTTAAAGCGAAACTAAAAATGAGGCAAGAAGGAGCAATTAAGAGAGATAGAACAATTTCATACTCCAATTCCACGCAGCAATCAACAGTGAGTTCTAGTCCAAACTCAAGAGCTTCTAAGCCATTGACTCGTCACAAGCACCACAATTTTGACAGAAAGATCTTGTTAGAACGCTGGATTGCAGATAAGCCATGGGAGAGCATGTTGGTGGGAGATATTAATTTGGACTCACCTAACATGACTCCATTGTCCAAAAAGACTGAGAATGTTGAACTCTCTTTCAACACATATCAACAAAATGGCTTAGCAAAAGCAAGAAGGAACGTTAATGGTGTGAAAACTAGGAGTTCATCTAAATCTCTTACAACCAGCCAATCAACTCCGTCGTCTTCGGCTAAAAGTTCCGATTGCATGTATGATGATAGCCCTTTATCAACTTCATCCACATCTGAATCACCAGGCAAGGAGAAAGATATAAAGGAAAGGAAAATCGGGAAACCGAGCTACACGAATTTGACAGCGTCAACCAAAGCTAAACTGAAACCGAGTAGACACTCGTCTCCGAATTTGAAGAGACTCTTTATGGATGATGATTATCTGTCTCATAGCACGAGGACAAACTTTCTAAATGCAGATACTAGAAGCATTTCTGGTTCATATTCTTCAGCTAGTATATGGAAAGATCTTTATGGAACGCCTTCAAGGACAAGCTATCAAAAACAATTTACATTGGGAGATAATTAG 1332 0.4114 MGGSGSWFKSLIPPRKFSTNNQVNGSDKSKRKWKLWRNSSEVDGFGSSMKKGNGFVGYDKYSCSSFVVNEEAFAAAMAAVLRTPHKDFLVIKQEWSAIRIQSAFRGFLARRALRALRALVRLQAIFRGRLVRKQAAVTLRCMQALVRVQERVKAKNVRNSPEKKAKQKLSNGQHNQADPAKQAEKGWCDIPGTVEDVKAKLKMRQEGAIKRDRTISYSNSTQQSTVSSSPNSRASKPLTRHKHHNFDRKILLERWIADKPWESMLVGDINLDSPNMTPLSKKTENVELSFNTYQQNGLAKARRNVNGVKTRSSSKSLTTSQSTPSSSAKSSDCMYDDSPLSTSSTSESPGKEKDIKERKIGKPSYTNLTASTKAKLKPSRHSSPNLKRLFMDDDYLSHSTRTNFLNADTRSISGSYSSASIWKDLYGTPSRTSYQKQFTLGDN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01343 443 MobiDBLite consensus disorder prediction 210 241 - -
Vifa4g01343 443 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Vifa4g01343 443 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Vifa4g01343 443 Pfam IQ calmodulin-binding motif 117 134 IPR000048 GO:0005515
Vifa4g01343 443 MobiDBLite consensus disorder prediction 154 185 - -
Vifa4g01343 443 MobiDBLite consensus disorder prediction 212 235 - -
Vifa4g01343 443 SMART iq_5 115 136 IPR000048 GO:0005515
Vifa4g01343 443 SMART iq_5 92 114 IPR000048 GO:0005515
Vifa4g01343 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 135 IPR027417 -
Vifa4g01343 443 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Vifa4g01343 443 MobiDBLite consensus disorder prediction 154 169 - -
Vifa4g01343 443 Gene3D - 91 146 - -
Vifa4g01343 443 MobiDBLite consensus disorder prediction 296 363 - -
Vifa4g01343 443 MobiDBLite consensus disorder prediction 296 348 - -
Vifa4g01343 443 PANTHER IQ-DOMAIN 5-RELATED 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01343 Vifa-Chr4 398739618 398741756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01343 1 426 IQD Protein Family AT1G72670 41.096 9.40e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01343 - - ahf:112710157 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00298 5 44478459 44480248 Vifa4g01343 4 398739618 398741756 PCT