Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01336 ATGCGTACTTCTCACAAAGAGTACGATGTATTCATTAGCTTTAGGGGAGAGGATACACGTAAAAACTTCACTGCCCAGCTTCATCAAGCTCTTACAGATAACAGTATCCATACATACATTGATTATATTCTTAAAAAAGGAGATGAGGTTGGACCTTCTCTTGCCAAAGCAATCAAGGACTCACATATCTCTATTGTAGTTTTCTCAGAAAACTATGCAACCTCAAAGTGGTGCTTGGATGAACTCCTCCATATACTCCAATGCAGAGAACTTCATGGACAGGTAGTTATACCCGTGTTCTGTGATGTAGATCCATCACATGTACGTTATCAGAAAGAGAGTTATCAGAAAGCATTTGCAAAATACATGAGAGAACTAGCCAGCAGTAAATCTCATCTAGACAAAGTGTTGGAGTGGAAAGGTGCTCTCTCTTCGGCCGCCAATATATCTGGCTGGGACTCTCGCAAATATAGGGATTATTCTCAAGTCATTCATGAAGTTGTGGCAGATGTTAAGCAGAAGTTGTCTCTCATGTTTCCCAATGAACTGAAAAACCTTGTTAAAGTTGATGAAAAGGATGAACATATTGAATTATTACTGAAAAAAATACCAAGAATCGGAATTTGGGGCATGAGTGGAATAGGAAAGACAACCATAGCTAAAAAAATGTTTGCCAAGAACTTTGCCCATTATGATAATGTGTGTTTCTTGGAAAATGTAAGCGAAGAAACAGAAAAGTTTGGACAAATGTATGTTCGTAATAAGCTTCTTAGTGAGCTACTGAAGCGAGAAATTACTGCATCTAACGTTCATGGACAACACACATTCATTAAGAGGAGGCTCAGTGGTAAAAAAAGTTTTATTGTACTTGATGATGTTGATAATGCTACACAATTAGATGATTTGTGTGGAGTACTTGACGACCTTGGACATAACAGTAGACTCATTATCACAACGAGAAACAAAGATATTCTGAGTGAAAAAGTTGATAAGATATATGAGGTCACACCATGGAAGCTTAAAGACTCTCTAAAGCTTTTTAGCTTAGGAGCCTTCCGGCAAAGCTATCCCAGAGAGGGTTATGAGCGTATAATCTCGGAAAGGGCAGTTGAATATGCAGGAGGTGTTCCATTAGCTTTAAAGGTTTTGGGTTTACATTTTAAATCAAAAAAACCAAAATCTTGGGTATCTGAGTTGAATGATTATGAGAACAAAGGAGAAACCTTCCCCGATATTCAAAAAGTGTTACAGCTAAGTTATAATGGATTATCATGGCGAGAGAAGAAGATGTTTCTTGACATTGCATTCTTTTTCAAAGATGAAAACAAAGACTTGGTCACAAGGATACTAAATACCTTTGATTTCAATGCAACTAATGGAGTAGAAATCCTAGAAAATAAAGCTCTTATATCCATTTCAAACAGTAATACGATACAGATTCATGGCTTACTACAAAATATGGCGTTTGATATAGCTCGACAAGAAGATAATGATCGAGGAAAGCGTCGCCGACTGAAAGATGCTAAAGACATTTGTGATTTACTTAGAAATAACAAGGGCATTGATGTAGTTGAAGGAATAATATTAGACTTGTCTCAAAATCTAGATTTAGAAGTTCAAGCTGACACATTCAACTTGATGACTGAATTAAGATTTCTGAAATTCCACGTCCCCAAATGTAAGAAGAAATTGGGCACGGTGCATCTTCCTAAAAATTTTAAGCTATTTTTTGACAAATTGGCATACCTTGAATGGAATGGGTATCCCTTGAAGTCTCTCCCAGAACCTATTCGCGTTGAGCAGCTGATTCAGATTTGTTTGCCGCACAGCAACATTGAACATCTTTGGTTCAAGAAACAGAAACTTACGAATTTAGAGGCAATCGACCTAAGTGGGTGCAAAAAGTTGAAGAACCTCCCTGATTTGTCTGGCGCGCCAAAACTCAAACAGTTGAGCCTTTCTGGTTGTGAAGAATTACTTGAAGTTCAGGCTTCTGCTTTTTCTAAGGACACACTTGTTACTTTGCTACTGGATGGGTGCAAAAAAGTGCCAAGTCTTATGGGTGAGAAGCATTTAAAATCTCTAGCAAACTTCAGTGTCAAAGGTTGCTATGGTCTGAAGGAATTTTCATTATCTTCGGATGCACTAAGAAGGTTGGATTTGAGCAATACAGGAATCGAAATATTGCACCCATCAATTGGTGGTATGACCAAGCTTTATTCGTTAAATCTAGAAGGTTTAAATCTAACAAGTCTACCGATTGAATTGTCTTACTTGGCACTTACTGAACTTCGGGTTTCTAAGTGCAGTGTAGTAACCAAATCAAAGTTAAAAGCCCTATTTGATGGTCTGAGCTTACTAAGATTACTACACTTGAAAGACTGTGGTAACTTGTTTGAACTCCCTGCAAACATTAGTTCTTTATCATCATTGCAAGAGTTAAGACTAGATGGAAGCAATGTGAAGGAGTTGCCTGCTAGCATCAAAGACCTCTTAGAGCTAGAAGTTCAGTCTTTAGACAATTGCAGTAAGCTTCAATGTCTGCCAGAACTGCCTTTAAGCATCAAAGAGTTTCAGGCTGGCAACTGCTTGTCGTTAACGACAGTATCCACTTTGAAGACTTTTTCAGTAAACATGATTGGACAGAACAAATACATTTCAATAACGAATAGCATTAAGATGAAACTGGATGGACCCTCCCTTGCCTGCATGACGGAAGATGCCGTGTTAACAATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATTCCAAACCCACAGCTACAATTATAACAGCGCCGAGGTATGTCTGCCAGGACACAGAATTCCAAGTCAGTTCAAACAACGATCCACCACATACGCCTCCTTAACTATTGACGTTCTCAACTGGGTGGGCTTCATTTTAGCAGTTGTTGTTACTCCATCTAACATAACACAAGAGGGTGAATACTTTGTTGGAATCCTATGTCAGTGCTATTCGGAAGATGGAAGGACGGAAGTGGGAAATAAGTCTAAGTGGAAGCCTAAACTGGTTACAGATTTGGAAATGGATCATATTTTTGTATGGTATGATCCATTCCTTTGTGACACCATACTCAGAAGGAATGAAAGAAAGGTTTCTTTTAAATTCTATATTACAACTTATACAACTAGTGGCAGAGAACTTGGTGACCTTTTAAAAATCAAAGAGTGTGGGGTTTGTCCAATTTACTACTCAGAAAGTCAGAAGGTTTTAGGCACAGGGAATTTAGACAAAGACTTGGAAAAAGAGTTGTATCAGGAAATTGAACATGAGAGATCAGTTGAAGGCTATGATGAGGGAGAAGGCATTGATATTGAACCAAATGACAAGGAAGGCACGAGCATACAGAACCAAGAGTTGGACTGTTTAATCGTCTCTGATACTCAGGTACATGACGATCCTCAAGAGAAAGAAAATTCGGAAGATGATGATAATTCCAAAGAATTGATGAAATCTGAGATTCTTCATTATAGTACTTCTTTGAAGTCTGGAGAGGAAGATTCTACTGAAGGAAGTTCTGATGCAGAATTGTCAATCAATAAAGAAATTAAGAGAGACGACTCTTCTGGTGTTGATGAATCACACTCTTCTACTTTTCCAACAAGATTGAGTTTAACAAACAAGTTGAAGATATATGAGGAAACTAAAAATCTTAAACCATCACTACCATCATTAGTGAAGATTCCATCTCCTTCTTATACTAATTTGTTACAACTACAAGAAGCTCCCAGCAAACTAATCCCAAACTCCTCAACGGATGCTGAAAGTTCTTCAAGTAAACCTTCTTCTTCAAAGGGTCAAATAAGAACTGAAGAAAACTCTTCAAAATTAAAGAAATTGAGTACTCCAGAACATTCTCCTGTCGATTATTCTGAATACAAAAAAACTCTTGAAGAAGACCCTTGGGCAATCATAGAGAAACTCTTATCTGATGAACATGTTAGTACTTCACAGGCTTCTCAATCTACAACACAAGCAGAATCTACTGAAACTCCGAACGAGTCAATCGAGAAGCTGCTTGATGAATTACGAGAATTGGCATTTTCTAAGAACTTATTGAAAAATTTAAGCAATGATGTGACCCTTGAAGAAGAGGTAAAAGCTTTATTAGTTAAACTCAATGATAGAGCTAATGAGCTTTCTGTGAAACAAAATTCTGGTATTACTGATTTCACCACATTCTTTAATAAAGCCACGGTCAATATTGATGAAGAAAAACGGAGCAATGTTACTCTTCAACAACTTAATGTGGACGATTCAGATTCAAGAGCCAAGCTTCAAGAATCTCAAAACAAGATAAAGAAGTTCAAAGAGTCCATCGTTGCTGGTGAGGATAAGATTAAAGTCATGGATGTTGAAATTGAAGATATTAAAGGGCAGATTGTTTTGCTGGAGGAAAAAGCACTTAAGGTTGAACAAGAGAAGTTGCAGTTAGAGGATGCCTTGCTGAAATGTAAAGAGAAGAGAAGTGGAATTTTCGATGAAGCTAAAAATGTAGCCTCTAAAACCATACAAACCCGGGAGAAGATTAATAATGTCAAAATGAAGAAGCTGGAGTTGGATTCAAATTATGAGAAAATTCAAAAATATTATGCCATAATGAGACTATCACCTCCTTTTTAG 4656 0.3741 MRTSHKEYDVFISFRGEDTRKNFTAQLHQALTDNSIHTYIDYILKKGDEVGPSLAKAIKDSHISIVVFSENYATSKWCLDELLHILQCRELHGQVVIPVFCDVDPSHVRYQKESYQKAFAKYMRELASSKSHLDKVLEWKGALSSAANISGWDSRKYRDYSQVIHEVVADVKQKLSLMFPNELKNLVKVDEKDEHIELLLKKIPRIGIWGMSGIGKTTIAKKMFAKNFAHYDNVCFLENVSEETEKFGQMYVRNKLLSELLKREITASNVHGQHTFIKRRLSGKKSFIVLDDVDNATQLDDLCGVLDDLGHNSRLIITTRNKDILSEKVDKIYEVTPWKLKDSLKLFSLGAFRQSYPREGYERIISERAVEYAGGVPLALKVLGLHFKSKKPKSWVSELNDYENKGETFPDIQKVLQLSYNGLSWREKKMFLDIAFFFKDENKDLVTRILNTFDFNATNGVEILENKALISISNSNTIQIHGLLQNMAFDIARQEDNDRGKRRRLKDAKDICDLLRNNKGIDVVEGIILDLSQNLDLEVQADTFNLMTELRFLKFHVPKCKKKLGTVHLPKNFKLFFDKLAYLEWNGYPLKSLPEPIRVEQLIQICLPHSNIEHLWFKKQKLTNLEAIDLSGCKKLKNLPDLSGAPKLKQLSLSGCEELLEVQASAFSKDTLVTLLLDGCKKVPSLMGEKHLKSLANFSVKGCYGLKEFSLSSDALRRLDLSNTGIEILHPSIGGMTKLYSLNLEGLNLTSLPIELSYLALTELRVSKCSVVTKSKLKALFDGLSLLRLLHLKDCGNLFELPANISSLSSLQELRLDGSNVKELPASIKDLLELEVQSLDNCSKLQCLPELPLSIKEFQAGNCLSLTTVSTLKTFSVNMIGQNKYISITNSIKMKLDGPSLACMTEDAVLTMKSAAFHNVLVRKYRFQTHSYNYNSAEVCLPGHRIPSQFKQRSTTYASLTIDVLNWVGFILAVVVTPSNITQEGEYFVGILCQCYSEDGRTEVGNKSKWKPKLVTDLEMDHIFVWYDPFLCDTILRRNERKVSFKFYITTYTTSGRELGDLLKIKECGVCPIYYSESQKVLGTGNLDKDLEKELYQEIEHERSVEGYDEGEGIDIEPNDKEGTSIQNQELDCLIVSDTQVHDDPQEKENSEDDDNSKELMKSEILHYSTSLKSGEEDSTEGSSDAELSINKEIKRDDSSGVDESHSSTFPTRLSLTNKLKIYEETKNLKPSLPSLVKIPSPSYTNLLQLQEAPSKLIPNSSTDAESSSSKPSSSKGQIRTEENSSKLKKLSTPEHSPVDYSEYKKTLEEDPWAIIEKLLSDEHVSTSQASQSTTQAESTETPNESIEKLLDELRELAFSKNLLKNLSNDVTLEEEVKALLVKLNDRANELSVKQNSGITDFTTFFNKATVNIDEEKRSNVTLQQLNVDDSDSRAKLQESQNKIKKFKESIVAGEDKIKVMDVEIEDIKGQIVLLEEKALKVEQEKLQLEDALLKCKEKRSGIFDEAKNVASKTIQTREKINNVKMKKLELDSNYEKIQKYYAIMRLSPPF 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01336 1551 Gene3D - 173 333 IPR027417 -
Vifa4g01336 1551 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 712 IPR044974 GO:0006952
Vifa4g01336 1551 PRINTS Disease resistance protein signature 205 220 - -
Vifa4g01336 1551 PRINTS Disease resistance protein signature 373 387 - -
Vifa4g01336 1551 PRINTS Disease resistance protein signature 280 294 - -
Vifa4g01336 1551 PRINTS Disease resistance protein signature 620 636 - -
Vifa4g01336 1551 SUPERFAMILY "Winged helix" DNA-binding domain 411 515 IPR036390 -
Vifa4g01336 1551 Coils Coil 1437 1457 - -
Vifa4g01336 1551 Gene3D Ribonuclease Inhibitor 514 709 IPR032675 -
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1258 1281 - -
Vifa4g01336 1551 Pfam TIR domain 8 184 IPR000157 GO:0007165
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1141 1158 - -
Vifa4g01336 1551 Pfam NB-ARC domain 205 404 IPR002182 GO:0043531
Vifa4g01336 1551 SUPERFAMILY L domain-like 527 872 - -
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1324 1344 - -
Vifa4g01336 1551 Gene3D Ribonuclease Inhibitor 710 920 IPR032675 -
Vifa4g01336 1551 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Vifa4g01336 1551 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1324 1345 - -
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1139 1158 - -
Vifa4g01336 1551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 434 IPR027417 -
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1258 1298 - -
Vifa4g01336 1551 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Vifa4g01336 1551 MobiDBLite consensus disorder prediction 1282 1298 - -
Vifa4g01336 1551 Gene3D - 4 172 IPR035897 -
Vifa4g01336 1551 SMART till_3 7 149 IPR000157 GO:0007165
Vifa4g01336 1551 Coils Coil 1465 1499 - -
Vifa4g01336 1551 Gene3D - 339 424 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01336 Vifa-Chr4 396903103 396908590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01336 3 835 WRKY Transcription Factor Family AT4G12020 29.695 1.99e-81 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01336 - - cam:101489032 2052.33