Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01334 ATGTCTACCTCTCACAAAAAGTATGATGTATTCATTAGCTTTAGGGGAGAGGACACACGGACAAACTTCACTGCGCAGCTTCATCAAGCTCTTACCAATAGAAACATCGAAGCATACATTGATTATAATCTTATAAAGGGACATGAGGTTGGACCCGCTCTTGCCAAAGCAATCCAGGACTCACATCTGTCTATTGTAGTTTTCTCAGAAAACTATGCAACCTCAAAGTGGTGCTTGGATGAACTTCTCCACATACTTCAGTGCAGAGAACTTCATGGACAGGTAGTTATACCCGTGTTCTGTGACGTAGATCCATCACATGTACGTTATCAGAAAGAGAGTTATCAGATAGCATTCTCAAAATATCATAGAGAATTCGCCAAGAACAAGAAATCCCATCTAAACAAATTGTCTCAGTGGAAAGCTGCTCTCACTTTAGCCGCCAATATATCTGGATGGGACTCTCGTAAATATAGGGATTATTCTCAAGTCATAGACAATGTTGTGGAGGATGTTTTACAGAAGTTGTCCCACATGTATCCTAATGAACTGAAAAACCTTGTTAAAGTTGATGGAAAGGATGAACATATTAAATTTTTACTGAAAACAACACCAAGAATCGGAATTTGGGGCATGGGTGGAATAGGAAAGACAACCATAGCGATACAGATGTTTGCCAATAACTTTGCCCATTATGATAATGTATGTTTCTTGGAAAATGTAAGCGAAGAATCAGAAAAGTTTGGACAAACGTATGTTCGTAATAAACTTCTTAGTAAGCTACTGAAGCGAGAGATTACTGCATCCGATGTTCATGGACAACATACATTCATCAAGAGGAGGCTCAGTGGTAATAAAAGTTTCATTGTACTTGATGATGTCGATAATGCTACACAACTAGATGATTTGTGTGGAGTACTTGATGACCTTGGACCTGACAGTAGACTCATTATCACAACGAGAGACAGACATATGCTTAGTGGAAGAGTTGACAAGATATATGAGGTCACACCATGGAAGCTTAAAGACTCTCTAAAGCTTTTTTGCTTAGGAGCCTTCAAGCAAAGCCATCCTAGAGAGGGTTACGAGCATATCTTGGAAAGGGCGGTTCAATATGCAGGAGGTGCTCCGTTAGCTTTAAAAGTTTTGGGTTTACATTTTAATTCCAAAAAACCAAAATTTTGGGAATCTGAGTTGAATGATTACGAGATCAAAGGAGAAGCGTTCCCCGATATTCAAAAAGTGCTAAAGCTAAGCTACAACGGATTATCATGGCGAGAGAAGGAGATGTTTCTAGACATTGCATTCTTTTTCAAAGATGAAGATAAAGACTTCGTCACAAGGATACTAAATGCCTTTGGTTTCAATGCAACTAGTGGAGTAGAAATCCTAGAAGATAAAGCTCTTATATCCATTTCAAACAGCAATAAGATACAGATTCATGGCTTACTACAAAAGATGGCCTTTGATATAGTTCGACAAGAACATAATAAAGACCCGGGAAAGCGCAGCCGACTGAGGGATGCTAAAGATATTTGTGATGTACTTGGAAGAAACAAGGGGAGTGAGGCAGTTGAAGGAATAATATTTGATTTGTCTCAAACACTAGATTTAAATGTTCAAGCTGACACATTCAACTTGATGACTAAATTAAGATTTCTTAAATTCCACGTCCCCTCAGGTAAAAAGAAATTGGGCACCGTGCATCTTCCTAAAAATATTATGCCGTTTTTTGACAAATTGACATACCTTGAGTGGAACGGGTATCCCTTGAAGTCTCTCCCACAACCTTTTCGTGCTGAGCAGTTGATTCAGATTTGTTTGCCGAACAGCAACATCGAACATCTTTGGTTTGGGATGCAGGAACTTGTGAATTTAGAGGCAGTTGATCTAAGTGAGTGCAAATGGTTGATTGACCTCCCTGATTTGTCGAGGGCATTAAAATTAAAACAGTTGCGCCTTTCTGGCTGTGAAAATTTATGTGAAGTTCAGGCTTCTGCTTTTTCAAAGGACACACTTGATACTTTGCTACTTGATGGGTGCACAAAACTGCCAAGTCTTATGGATTCAATAAGAAGGTTGGATTTAAGCAATACAGGAGTCGAAATATTGCACCCAACAATCGGTGGTATGAACAAGCTTTATTCGTTGAATCTAGAAGGTTTAAATCTAACAAATCTACCAATTGAATTGTCTCGCTTGAGATCACTTACTGAACTTCGCGTTTCTAAGTGTAGTGTAGTAACAAAATCAAAGTTAAAAGCCCTTTTTGATGGTTTGGGCTCATTAAGATTATTACACTTGAAAGACTGTTGTAACTTGTTTGAAATCCCTGCAAACATTAGTTCCTTGTCATCATTGCATGAATTGAAACTAGATGGTAGCAGTGTGGAGGGGTTGCCCCCTAGCATCATGTACCTCTCAAAGCTAGAAGTTCAGTCTTTAGACAATTGCAGTAAGCTTCGTTGTCTGCCAGAACTTCCTTCAAGCCTCAAAGAGTTTCAAGCCGACAACTGCACCTTGTTAATGACAGTATCCACTTTGAAGACTTTTTCAATAAACATGATTGGACAGAAAAAATACATTTCGTTTCAGAATAGTATTAAGATGGAATTGGATGGACCCTCCCTTGCCCGCATTACGGAAGATGCCATGTTCACTATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATACCAAACCCACAGCTACAATTATAACAGTGCCGGGGTTTGTCTGCCAGGGCACAGAGTTCCAAGTCAGTTCAAACACCGATCAACCAAATATTCCTCCGTAACTATCAACATTTCCAACTCGGTGGGCTTCATTTTAGCAGTTGTTGTTACTCCATCTAACATAACACAAGAGCGTGAATACTTTGTTGGAATCCTATGTCAATGCTATTTGGAAGATGGAAAGAGGGAGGTGGGATATAAGTCTAGCTGGAATCATAAACCGGTTTCAAATTTGAACATGGATCACGTTTTTGTATGGTATGATCCATACCATTCTGACAGCATACTCAGAAGGGATGAACAAAAGGTTTCTTTTAAATTCCGCATTACAACTTGTACAAGTAGCGGCAGAGAACTTGGTGGCCTTTTAAGTATCAAAGAGTGTGGGGTTTGTCCAATTTACTACTCAGAAAGTAGGAGGGTTTTAGGCACAGGGAATTTAGACAAGGGTTTAGAATTAGAGTTGTATCAGGAAATTGAGTTTGAGAGATCAGTTGAAGGCTATGATGAGGGAGAAGGCATTGACATTGAATCAAATGAAATAGATGAAGACAAGGAAGGCACTGGCAAACAGAACCAAGAGTTTGACTTGAATGAAAATGGTTACCATTCATATGACTATTTAGTTGATACTCAATTTTTTCTGTCAAACTCACCATTTCTTTATGACAATCCTCAAGAGAAAGTAAATTTGGAAGATGATGATAATTCCAAAGAAATGATGAAATATGAGATTCTTCATAATAGTACTTCTTTGAAGTCTGGAGAGGAAACTGAAACTTCTTCCAACAAACAAAAACAATTCGAGAAGGAGCAAGATTCTACCAAAGGAAGTTCTGATATTGAATTGTCTATCATTAAAAGAGACAAATCTTCTTCTGATGATGAATCACACCCTTCTATATCTCCACCAAGATTAATTTTAACAAACAAGTTGAAGACAGATGAGGCAAATAAGAATCTGCAACAATCACCACCATCATTAGTGAAGAATCTATATATTCCAACTGATTCTTTTACTAACTTGTTACAACTACAAGATCCTCCCGACAAATTAAATCCAAACTCCTCAATGGCTGCTGAGAGTTCTTCAAGTAAGCCTTCTTCTTCAAAGGGTCCAGTAAGAACAATTGAAGAGGACTCTTCAAAATTAAAGAAATGCAGTACTTTGGAATGCTCTCCTGTCGATTATTCTGAATATAAGAGAGTCCTTGAAGAAGACCCTCTAGCAATCTTGGAGAAACTCTTATCGGATGAACTTGGTCTTTCTTCACAGGCTTCTCACTCTACAACACAAGCAGAAGCTACTGAAACTGGTAAAGAGTCAATTGAGATGCTGCTTGATGAATTAAGGCAATTGGCTTTTTCGAGGAACTTGTTGAAGAATTTATCCAATGATGCGACCCTTGAAGAAGAGGTGAAAGCTTTATTAGTTAAACTCAATGATAGAGCTAATGAGCTTTCTGAGAAACAAAGTTCTGGTATTACTGATTTCACAACAATCTTTAACGAGGCCACAGTCAATATTGATGAAGGAAAACGGAGCTATGTTACTCTTCAACAACTTAATGTGGACCATAAAGATTTAATATCAAAGCTTCAAGCATCTAAAATCAAGATAAGGAAGTTTGAAGAGTCCATCATTGCTGGTGAGGATAAGATTAAGGCCATGGATATTGAAATTGAAGATATTAAAGCGCAGATTTTTTTGCTGGAGGAAAAAGCGCGCAAGGTTCAACAAGAGAAGTCACAGTTAGAGGATGCCTGCTGGAAATGTAAAGAGAAGAGAAGTGAAATTTTGGAGGAAGCTAAATATGTAGCATCTAAGACCATACAAACCCGCGAGAAGATTGATTCTGTCAATAAAAAGAAGCTGGAGTTGGATTCAAAATATGATATGCTTGAAGGACATTATGCCATAATGAGACATTCGCCTCCTTTTTAG 4692 0.3824 MSTSHKKYDVFISFRGEDTRTNFTAQLHQALTNRNIEAYIDYNLIKGHEVGPALAKAIQDSHLSIVVFSENYATSKWCLDELLHILQCRELHGQVVIPVFCDVDPSHVRYQKESYQIAFSKYHREFAKNKKSHLNKLSQWKAALTLAANISGWDSRKYRDYSQVIDNVVEDVLQKLSHMYPNELKNLVKVDGKDEHIKFLLKTTPRIGIWGMGGIGKTTIAIQMFANNFAHYDNVCFLENVSEESEKFGQTYVRNKLLSKLLKREITASDVHGQHTFIKRRLSGNKSFIVLDDVDNATQLDDLCGVLDDLGPDSRLIITTRDRHMLSGRVDKIYEVTPWKLKDSLKLFCLGAFKQSHPREGYEHILERAVQYAGGAPLALKVLGLHFNSKKPKFWESELNDYEIKGEAFPDIQKVLKLSYNGLSWREKEMFLDIAFFFKDEDKDFVTRILNAFGFNATSGVEILEDKALISISNSNKIQIHGLLQKMAFDIVRQEHNKDPGKRSRLRDAKDICDVLGRNKGSEAVEGIIFDLSQTLDLNVQADTFNLMTKLRFLKFHVPSGKKKLGTVHLPKNIMPFFDKLTYLEWNGYPLKSLPQPFRAEQLIQICLPNSNIEHLWFGMQELVNLEAVDLSECKWLIDLPDLSRALKLKQLRLSGCENLCEVQASAFSKDTLDTLLLDGCTKLPSLMDSIRRLDLSNTGVEILHPTIGGMNKLYSLNLEGLNLTNLPIELSRLRSLTELRVSKCSVVTKSKLKALFDGLGSLRLLHLKDCCNLFEIPANISSLSSLHELKLDGSSVEGLPPSIMYLSKLEVQSLDNCSKLRCLPELPSSLKEFQADNCTLLMTVSTLKTFSINMIGQKKYISFQNSIKMELDGPSLARITEDAMFTMKSAAFHNVLVRKYRYQTHSYNYNSAGVCLPGHRVPSQFKHRSTKYSSVTINISNSVGFILAVVVTPSNITQEREYFVGILCQCYLEDGKREVGYKSSWNHKPVSNLNMDHVFVWYDPYHSDSILRRDEQKVSFKFRITTCTSSGRELGGLLSIKECGVCPIYYSESRRVLGTGNLDKGLELELYQEIEFERSVEGYDEGEGIDIESNEIDEDKEGTGKQNQEFDLNENGYHSYDYLVDTQFFLSNSPFLYDNPQEKVNLEDDDNSKEMMKYEILHNSTSLKSGEETETSSNKQKQFEKEQDSTKGSSDIELSIIKRDKSSSDDESHPSISPPRLILTNKLKTDEANKNLQQSPPSLVKNLYIPTDSFTNLLQLQDPPDKLNPNSSMAAESSSSKPSSSKGPVRTIEEDSSKLKKCSTLECSPVDYSEYKRVLEEDPLAILEKLLSDELGLSSQASHSTTQAEATETGKESIEMLLDELRQLAFSRNLLKNLSNDATLEEEVKALLVKLNDRANELSEKQSSGITDFTTIFNEATVNIDEGKRSYVTLQQLNVDHKDLISKLQASKIKIRKFEESIIAGEDKIKAMDIEIEDIKAQIFLLEEKARKVQQEKSQLEDACWKCKEKRSEILEEAKYVASKTIQTREKIDSVNKKKLELDSKYDMLEGHYAIMRHSPPF 1563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01334 1563 Pfam NB-ARC domain 196 395 IPR002182 GO:0043531
Vifa4g01334 1563 SUPERFAMILY "Winged helix" DNA-binding domain 411 516 IPR036390 -
Vifa4g01334 1563 Gene3D - 340 424 IPR042197 -
Vifa4g01334 1563 PRINTS Disease resistance protein signature 373 387 - -
Vifa4g01334 1563 PRINTS Disease resistance protein signature 206 221 - -
Vifa4g01334 1563 PRINTS Disease resistance protein signature 281 295 - -
Vifa4g01334 1563 PRINTS Disease resistance protein signature 621 637 - -
Vifa4g01334 1563 MobiDBLite consensus disorder prediction 1258 1296 - -
Vifa4g01334 1563 MobiDBLite consensus disorder prediction 1258 1291 - -
Vifa4g01334 1563 Gene3D - 173 333 IPR027417 -
Vifa4g01334 1563 ProSiteProfiles TIR domain profile. 6 176 IPR000157 GO:0007165
Vifa4g01334 1563 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 178 - -
Vifa4g01334 1563 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 153 IPR035897 -
Vifa4g01334 1563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 434 IPR027417 -
Vifa4g01334 1563 MobiDBLite consensus disorder prediction 1163 1223 - -
Vifa4g01334 1563 SUPERFAMILY L domain-like 529 849 - -
Vifa4g01334 1563 MobiDBLite consensus disorder prediction 1175 1212 - -
Vifa4g01334 1563 Coils Coil 1386 1406 - -
Vifa4g01334 1563 SMART till_3 7 150 IPR000157 GO:0007165
Vifa4g01334 1563 Gene3D Ribonuclease Inhibitor 528 688 IPR032675 -
Vifa4g01334 1563 Gene3D Ribonuclease Inhibitor 689 867 IPR032675 -
Vifa4g01334 1563 Coils Coil 1470 1504 - -
Vifa4g01334 1563 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 721 IPR044974 GO:0006952
Vifa4g01334 1563 Gene3D - 4 172 IPR035897 -
Vifa4g01334 1563 Pfam TIR domain 7 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01334 Vifa-Chr4 396879669 396898734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01334 3 790 WRKY Transcription Factor Family AT4G12020 29.447 8.27e-81 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01334 - - cam:101489032 2248.78