Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01332 ATGACACGGGGAAGGATAAGGGCGAGGCTTCGAAGGAGCCATTTTTACACATTTGGTTGTCTTCGACCTCCTACCACTGAAGAGGGTCCTCATCCACTTCAAGGTCCTGGGTTCTCGCGAACGGTGCATTGCAACCAGCCTCTCCTCCATGAGAAGAGACCTTTATATTACTGCAAGAATGATATTTCCACGACCAAATACAATGTGCTTACATTTTTGCCCAAGGCTCTTTTTGAACAGTTTCGTAGAGTTGCTAATATTTACTTTCTTTTGGCTGCGTGTCTCTCGGCTACTTCTATGTCACCTTTTAGTGCACTGAGTATGACTGCTCCTTTGGCATTTGTTGTCGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCGCGCAGGTTTGTTCAGGATGTTAAAGTTAACCGACGAAAAGTTAATCATCATAAAGGCGATGGTGTTTTTGGACACAGGTCATGGCAGAACATTATGGTTGGGGATGTAGTAAAAGTAGAAAAGGATAAGTTTTTTCCAGCTGATATGCTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGTCTACCTTGGCCCTAGATAGTGATGAAGCTTTTAAGGATTTCTCTGGAATAATAAGATGTGAAGACCCAAACCCCAACCTTTACACTTTTGTTGGAAACTTAGAGTATGAACGCCAGGTTTATCCTCTCGACCCTAGTCAAATTCTCCTTCGAGATTCTAAGCTCAGGAACACAGAATACATCTATGGAGTGGTCGTTTTCACTGGTCACGACAGTAAAGTCATGCAGAATTCCACAAGATCCCCTTCAAAAAGGAGCACAGTAGAAAAGAAGATGGATTATATCATATACACTCTCTTCAGTGTCCTTCTCTTTATATCTGTCATTAGTACCATAGGATTTATTGTCAAGACTGAATTCCAAATCACAAAGTGGTGGTACTTACGCCCTGACAATATCGAATCTCAGTATGATCCCCGGCAAGTTGGAGTGGCTGGGTTGAGTCATTTGGTTACTGCTCTGATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCAATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCAGATGTATGATGAAGAAACCGGAACTCCAGCTGACGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTGGATACAATTCTCTCCGATAAAACTGGAACGTTGACCTGCAATCAGATGGACTTTTTAAAGTGCTCTATTGCTGGTGCTCCATATGGTGCGTGTTCTAGTGAAGTTGAGCTTGCTGCAGCAAAGCAAATAGCTTCTGATCTTGAGGAGGATTCAGATCTCTCCAATTTCCCGATGCCTAATAAGAAACGGCATGTCTCATGGGAAAATATTGGAAGAGCCGACGAAATTGAACTAGAGACTGTGGTTACTTCCAAAGGTGACGAGGATGAAAGGCAAACTATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATGGTAATTGGTTGCAAGAGCCCAATCCAGATGACATTTTATTATTTTTCCGAATACTTGCTGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACGGGTGGTTTTACATATGAAGCAGAGTCTCCAGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTTTAGGAGGACTCAGTCAAGTATTTTTACACATGAAAGAATATCTGCTTCAGGAGAAATGATTGAAAGGGAGTACAAACTCTTGAATCTACTAGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCCAACTTTTTCTTCTATGCAAGGGGGCTGACAGTATCATATTTGATCGTTTGTCCAAGAATGGAAAAATGTATTTGGAGGCTACTACCAAACATTTAAATGACTATGGAGAAGCAGGTTTGCGAACACTGGCTCTGGCCTATAGAAGGCTTGAAGAAAAAGAGTACTCGGATTGGAACAATGAGTTTCAGAAAGCTAAAGCAGCTGTTGGGGTTGATAGAGAGGCAATGCTTGAGCAGGTATCAGAGGTTATGGAAAAAGACTTGATTCTTGTTGGGGCTACTGCCATAGAAGACAAATTGCAGAAAGGGGTTCCCGAGTGCATTGATAGACTTGCTCAAGCTGGTCTCAAGCTTTGGGTATTGACGGGAGATAAGATGGAAACTGCAATCAACATTGGATTTTCCTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACAAATTCAGACTCAGCACCCAATGATGTCAAACAGGCCATCAAGGACAACATATTGAATCAAATCACCAATGCAATACAAATGATAAAGCTGGAGAAGGATCCTCATGCAGCATTTGCATTAATTATTGATGGAAAAACACTGACATATACTTTAGAAGATGATGTGAAGCACCAGTTTTTGGGACTGGCAGTTGATTGTGCATCTGTTATCTGTTGTCGGGTGTCTCCCAAGCAAAAAGCACTCGTCACAAGGTTGGTAAAAGAAGGAACCGGGAAGACCACTCTCGCAATCGGTGATGGTGCCAATGATGTTGGCATGATACAAGAAGCAGATATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTCTCGATTGCCCAATTTCGATTTTTGGAGCGGCTTATAGTGGTCCATGGACACTGGTGTTACAAGAGAATTGCACAGATGATATGTTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCTTATTCTTTTTTGAGGCATTTACCGGCTTCTCTGGCCAATCAGTTTATGCTGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTACCCGTCATTTCACTTGGTGTTTTTGAACAAGATGTTTCATCAGAAGTTTGTTTACAGTTTCCAGCATTGTACCAACAGGGACCGAAAAATTTGTTCTTTGATTGGTATAGAATATTGGGATGGATGGCCAATGGTGTATATTCCTCCCTCGTCATCTTCTTCCTCACTGTCGGCATATTCTATGATCGCCCATTCCGTATTGATGGCCAGACAGCCGACATGGGTGCTGTTGGAACCACGATGTTCACTTGCATCATCTGGGCTGTCAACTGCCAAATTGCTCTTACAATGAGTCATTTTACATGGATTCAACATCTGTTTGTATGGGGTAGCATAACCACTTGGTACATTTTTCTTGTGATATACGGCGCACTTCCTCCTGACTGGTCATTGAGTGCTCACCAGTTACTGATTGAAGCTCTTGGACCTGCGCCTATTTATTGGTCAACAACACTCTTAGTTACAGTTGCATGTATTCTTCCTTATCTTGTCCACATATCTTACCAAAGATGTTTTAATCCCATGGATCACCACATTATCCAAGAAATCAAACACTACAAGAAAGATATTGAGGATCAACACATGTGGACCCGGGAGAGTTCAAAAGCCAGACAAGAAACCAAGATTGGGTTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAGGGAAAGCTGCAGAAAAAACAATCTTTCTTGACTGCTATGTCCCCATTACGTACATAA 3675 0.4193 MTRGRIRARLRRSHFYTFGCLRPPTTEEGPHPLQGPGFSRTVHCNQPLLHEKRPLYYCKNDISTTKYNVLTFLPKALFEQFRRVANIYFLLAACLSATSMSPFSALSMTAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGDGVFGHRSWQNIMVGDVVKVEKDKFFPADMLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSDEAFKDFSGIIRCEDPNPNLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTEYIYGVVVFTGHDSKVMQNSTRSPSKRSTVEKKMDYIIYTLFSVLLFISVISTIGFIVKTEFQITKWWYLRPDNIESQYDPRQVGVAGLSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGAPYGACSSEVELAAAKQIASDLEEDSDLSNFPMPNKKRHVSWENIGRADEIELETVVTSKGDEDERQTIKGFGFEDDRLMNGNWLQEPNPDDILLFFRILAVCHTAIPELNEETGGFTYEAESPDEGAFLVAAREFGFEFFRRTQSSIFTHERISASGEMIEREYKLLNLLDFTSKRKRMSVIVRDEEGQLFLLCKGADSIIFDRLSKNGKMYLEATTKHLNDYGEAGLRTLALAYRRLEEKEYSDWNNEFQKAKAAVGVDREAMLEQVSEVMEKDLILVGATAIEDKLQKGVPECIDRLAQAGLKLWVLTGDKMETAINIGFSCSLLRQGMKQICITTNSDSAPNDVKQAIKDNILNQITNAIQMIKLEKDPHAAFALIIDGKTLTYTLEDDVKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLIVVHGHWCYKRIAQMICYFFYKNIAFGLTLFFFEAFTGFSGQSVYADWYMILFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMANGVYSSLVIFFLTVGIFYDRPFRIDGQTADMGAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYIFLVIYGALPPDWSLSAHQLLIEALGPAPIYWSTTLLVTVACILPYLVHISYQRCFNPMDHHIIQEIKHYKKDIEDQHMWTRESSKARQETKIGFTARVEAKIRQLKGKLQKKQSFLTAMSPLRT 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01332 1224 SFLD p-type atpase 405 930 IPR044492 -
Vifa4g01332 1224 FunFam Phospholipid-transporting ATPase 590 721 - -
Vifa4g01332 1224 NCBIfam phospholipid-translocating P-type ATPase 57 1165 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g01332 1224 Gene3D - 432 454 IPR023299 GO:0000166
Vifa4g01332 1224 Pfam Cation transport ATPase (P-type) 545 650 - -
Vifa4g01332 1224 SFLD C1.7: P-type atpase like 405 930 - -
Vifa4g01332 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 907 1157 IPR032630 -
Vifa4g01332 1224 NCBIfam HAD-IC family P-type ATPase 851 960 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01332 1224 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
Vifa4g01332 1224 Gene3D - 419 431 IPR023214 -
Vifa4g01332 1224 Gene3D - 719 919 IPR023214 -
Vifa4g01332 1224 FunFam Phospholipid-transporting ATPase 723 919 - -
Vifa4g01332 1224 CDD P-type_ATPase_APLT_Dnf-like 60 1039 - -
Vifa4g01332 1224 PRINTS P-type cation-transporting ATPase superfamily signature 879 898 - -
Vifa4g01332 1224 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Vifa4g01332 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1181 - -
Vifa4g01332 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1150 IPR023298 -
Vifa4g01332 1224 Gene3D - 106 288 - -
Vifa4g01332 1224 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
Vifa4g01332 1224 FunFam Phospholipid-transporting ATPase 118 288 - -
Vifa4g01332 1224 SUPERFAMILY HAD-like 410 923 IPR036412 -
Vifa4g01332 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Vifa4g01332 1224 Gene3D - 583 700 IPR023299 GO:0000166
Vifa4g01332 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 727 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01332 Vifa-Chr4 396694944 396700532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01332 1 1220 Primary Pumps ATPases AT1G17500 74.550 0.0 1928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01332 K01530 - gmx:100819559 2145.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00305 5 47354237 47360109 Vifa4g01332 4 396694944 396700532 PCT