Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01331 ATGACACGGGGAAGGATAAGGGCGAGGCTTCGAAGGAGCCATTTTTACACATTTGGTTGTCTTCGACCTCCTACCACTGAAGAGGGTCCTCATCCACTTCAAGGTCCTGGGTTCTCGCGAACGGTGCATTGCAACCAGCCTCTCCTCCATGAGAAGAGACCTTTATATTACTGCAAGAATGATATTTCCACGACCAAATACAATGTGCTTACATTTTTGCCCAAGGCTCTTTTTGAACAGTTTCGTAGAGTTGCTAATATTTACTTTCTTTTGGCTGCGTGTCTCTCGGCTACTTCTATGTCACCTTTTAGTGCACTGAGTATGACTGCTCCTTTGGCATTTGTTGTCGGGCTTAGTATGGCAAAGGAAGCATTGGAAGATTCGCGCAGGTTTGTTCAGGATGTTAAAGTTAACCGACGAAAAGTTAATCATCATAAAGGCGATGGTGTTTTTGGACACAGGTCATGGCAGAACATTATGGTTGGGGATGTAGTAAAAGTAGAAAAGGATAAGTTTTTTCCAGCTGATATGCTTCTCTTGTCATCAAGTTATGAGGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAAAGATCTTTGGAGTCTACCTTGGCCCTAGATAGTGATGAAGCTTTTAAGGATTTCTCTGGAATAATAAGATGTGAAGACCCAAACCCCAACCTTTACACTTTTGTTGGAAACTTAGAGTATGAACGCCAGGTTTATCCTCTCGACCCTAGTCAAATTCTCCTTCGAGATTCTAAGCTCAGGAACACAGAATACATCTATGGAGTGGTCGTTTTCACTGGTCACGACAGTAAAGTCATGCAGAATTCCACAAGATCCCCTTCAAAAAGGAGCACAGTAGAAAAGAAGATGGATTATATCATATACACTCTCTTCAGTGTCCTTCTCTTTATATCTGTCATTAGTACCATAGGATTTATTGTCAAGACTGAATTCCAAATCACAAAGTGGTGGTACTTACGCCCTGACAATATCGAATCTCAGTATGATCCCCGGCAAGTTGGAGTGGCTGGGTTGAGTCATTTGGTTACTGCTCTGATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCAATTGAGGTTGTGAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCAGATGTATGATGAAGAAACCGGAACTCCAGCTGACGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTGGATACAATTCTCTCCGATAAAACTGGAACGTTGACCTGCAATCAGATGGACTTTTTAAAGTGCTCTATTGCTGGTGCTCCATATGGTGCGTGTTCTAGTGAAGTTGAGCTTGCTGCAGCAAAGCAAATAGCTTCTGATCTTGAGGAGGATTCAGATCTCTCCAATTTCCCGATGCCTAATAAGAAACGGCATGTCTCATGGGAAAATATTGGAAGAGCCGACGAAATTGAACTAGAGACTGTGGTTACTTCCAAAGGTGACGAGGATGAAAGGCAAACTATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATGGTAATTGGTTGCAAGAGCCCAATCCAGATGACATTTTATTATTTTTCCGAATACTTGCTGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACGGGTGGTTTTACATATGAAGCAGAGTCTCCAGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGCTTTGAGTTTTTTAGGAGGACTCAGTCAAGTATTTTTACACATGAAAGAATATCTGCTTCAGGAGAAATGATTGAAAGGGAGTACAAACTCTTGAATCTACTAGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCCAACTTTTTCTTCTATGCAAGGGGGCTGACAGTATCATATTTGATCGTTTGTCCAAGAATGGAAAAATGTATTTGGAGGCTACTACCAAACATTTAAATGACTATGGAGAAGCAGGTTTGCGAACACTGGCTCTGGCCTATAGAAGGCTTGAAGAAAAAGAGTACTCGGATTGGAACAATGAGTTTCAGAAAGCTAAAGCAGCTGTTGGGGTTGATAGAGAGGCAATGCTTGAGCAGGTATCAGAGGTTATGGAAAAAGACTTGATTCTTGTTGGGGCTACTGCCATAGAAGACAAATTGCAGAAAGGGGTTCCCGAGTGCATTGATAGACTTGCTCAAGCTGGTCTCAAGCTTTGGGTATTGACGGGAGATAAGATGGAAACTGCAATCAACATTGGATTTTCCTGCAGTTTGCTTCGACAGGGCATGAAGCAGATCTGTATAACTACAAATTCAGACTCAGCACCCAATGATGTCAAACAGTTCTTTTGCTTAACACCGCAGGCCATCAAGGACAACATATTGAATCAAATCACCAATGCAATACAAATGATAAAGCTGGAGAAGGATCCTCATGCAGCATTTGCATTAATTATTGATGGAAAAACACTGACATATACTTTAGAAGATGATGTGAAGCACCAGTTTTTGGGACTGGCAGTTGATTGTGCATCTGTTATCTGTTGTCGGGTGTCTCCCAAGCAAAAAGCACTCGTCACAAGGTTGGTAAAAGAAGGAACCGGGAAGACCACTCTCGCAATCGGTGATGGTGCCAATGATGTTGGCATGATACAAGAAGCAGATATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTCTCGATTGCCCAATTTCGATTTTTGGAGCGGCTTATAGTGGTCCATGGACACTGGTGTTACAAGAGAATTGCACAGATGATATGTTATTTCTTCTACAAGAATATAGCATTTGGCCTCACCTTATTCTTTTTTGAGGCATTTACCGGCTTCTCTGGCCAATCAGTTTATGCTGACTGGTACATGATATTGTTCAATGTTGTTCTGACATCATTACCCGTCATTTCACTTGGTGTTTTTGAACAAGATGTTTCATCAGAAGTTTGTTTACAGTTTCCAGCATTGTACCAACAGGGACCGAAAAATTTGTTCTTTGATTGGTATAGAATATTGGGATGGATGGCCAATGGTGTATATTCCTCCCTCGTCATCTTCTTCCTCACTGTCGGCATATTCTATGATCGCCCATTCCGTATTGATGGCCAGACAGCCGACATGGGTGCTGTTGGAACCACGATGTTCACTTGCATCATCTGGGCTGTCAACTGCCAAATTGCTCTTACAATGAGTCATTTTACATGGATTCAACATCTGTTTGTATGGGGTAGCATAACCACTTGGTACATTTTTCTTGTGATATACGGCGCACTTCCTCCTGACTGGTCATTGAGTGCTCACCAGTTACTGATTGAAGCTCTTGGACCTGCGCCTATTTATTGGTCAACAACACTCTTAGTTACAGTTGCATGTATTCTTCCTTATCTTGTCCACATATCTTACCAAAGATGTTTTAATCCCATGGATCACCACATTATCCAAGAAATCAAACACTACAAGAAAGATATTGAGGATCAACACATGTGGACCCGGGAGAGTTCAAAAGCCAGACAAGAAACCAAGATTGGGTTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAGGGAAAGCTGCAGAAAAAACAATCTTTCTTGACTGCTATGTCCCCATTACGTACATAA 3696 0.4194 MTRGRIRARLRRSHFYTFGCLRPPTTEEGPHPLQGPGFSRTVHCNQPLLHEKRPLYYCKNDISTTKYNVLTFLPKALFEQFRRVANIYFLLAACLSATSMSPFSALSMTAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGDGVFGHRSWQNIMVGDVVKVEKDKFFPADMLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSDEAFKDFSGIIRCEDPNPNLYTFVGNLEYERQVYPLDPSQILLRDSKLRNTEYIYGVVVFTGHDSKVMQNSTRSPSKRSTVEKKMDYIIYTLFSVLLFISVISTIGFIVKTEFQITKWWYLRPDNIESQYDPRQVGVAGLSHLVTALILYGYLIPISLYVSIEVVKVLQATFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGAPYGACSSEVELAAAKQIASDLEEDSDLSNFPMPNKKRHVSWENIGRADEIELETVVTSKGDEDERQTIKGFGFEDDRLMNGNWLQEPNPDDILLFFRILAVCHTAIPELNEETGGFTYEAESPDEGAFLVAAREFGFEFFRRTQSSIFTHERISASGEMIEREYKLLNLLDFTSKRKRMSVIVRDEEGQLFLLCKGADSIIFDRLSKNGKMYLEATTKHLNDYGEAGLRTLALAYRRLEEKEYSDWNNEFQKAKAAVGVDREAMLEQVSEVMEKDLILVGATAIEDKLQKGVPECIDRLAQAGLKLWVLTGDKMETAINIGFSCSLLRQGMKQICITTNSDSAPNDVKQFFCLTPQAIKDNILNQITNAIQMIKLEKDPHAAFALIIDGKTLTYTLEDDVKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLIVVHGHWCYKRIAQMICYFFYKNIAFGLTLFFFEAFTGFSGQSVYADWYMILFNVVLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMANGVYSSLVIFFLTVGIFYDRPFRIDGQTADMGAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYIFLVIYGALPPDWSLSAHQLLIEALGPAPIYWSTTLLVTVACILPYLVHISYQRCFNPMDHHIIQEIKHYKKDIEDQHMWTRESSKARQETKIGFTARVEAKIRQLKGKLQKKQSFLTAMSPLRT 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01331 1231 FunFam Phospholipid-transporting ATPase 723 926 - -
Vifa4g01331 1231 Gene3D - 432 452 IPR023299 GO:0000166
Vifa4g01331 1231 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Vifa4g01331 1231 PRINTS P-type cation-transporting ATPase superfamily signature 886 905 - -
Vifa4g01331 1231 Gene3D - 719 926 IPR023214 -
Vifa4g01331 1231 FunFam Phospholipid-transporting ATPase 590 721 - -
Vifa4g01331 1231 NCBIfam phospholipid-translocating P-type ATPase 57 1172 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa4g01331 1231 SUPERFAMILY HAD-like 410 930 IPR036412 -
Vifa4g01331 1231 SFLD p-type atpase 405 937 IPR044492 -
Vifa4g01331 1231 SFLD Haloacid Dehalogenase 405 937 - -
Vifa4g01331 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1157 IPR023298 -
Vifa4g01331 1231 Gene3D - 419 431 IPR023214 -
Vifa4g01331 1231 SUPERFAMILY Calcium ATPase, transduction domain A 146 286 IPR008250 -
Vifa4g01331 1231 Pfam Cation transport ATPase (P-type) 545 650 - -
Vifa4g01331 1231 NCBIfam HAD-IC family P-type ATPase 858 967 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01331 1231 CDD P-type_ATPase_APLT_Dnf-like 60 1046 - -
Vifa4g01331 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 914 1164 IPR032630 -
Vifa4g01331 1231 Gene3D - 106 288 - -
Vifa4g01331 1231 Gene3D - 583 700 IPR023299 GO:0000166
Vifa4g01331 1231 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
Vifa4g01331 1231 FunFam Phospholipid-transporting ATPase 118 288 - -
Vifa4g01331 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Vifa4g01331 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 1188 - -
Vifa4g01331 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 727 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01331 Vifa-Chr4 396694944 396700532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01331 1 1227 Primary Pumps ATPases AT1G17500 74.125 0.0 1924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01331 K01530 - gmx:100784621 2165.58