Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01330 ATGGAACCTCGAATTGGGAATAAGTTTCGCCTTGGTCGGAAAATTGGGAGTGGATCTTTTGGTGAGATCTATCTAGGAACCAATATTCAGACGAATGAAGAGGTTGCGGTTAAGCTTGAAAATGCAAAAACCAAGCACCCTCAATTGTTGTATGAATCAAAGCTGTATAAATTACTGCAAGGAGGAACTGGGATACCGAACGCGAAATGGTCAGGTGTCGAAGGAGAGTATAATGTTCTTGTGATGGATTTACTCGGTCCTAGTCTTGAGGATTTATTCAATTTTTGTAATAGGAAACTGTCCCTTAAAACTGTTCTCATGCTTGCTGATCAAATGATAAATCGAGTTGAGTTTGTTCATACGAAGTCATTTTTACACCGTGACATCAAGCCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAGGTGTACGTCATTGACTTTGGTCTTGCTAAGAAATTCAGAGACAGTAATAATCAGCATATTCCCTACAGAGAGAATAAGAATTTGACGGGAACTGCTAGGTATGCCAGTATGAATACTCATCTTGGAATTGAACAAAGCCGTAGGGATGATTTAGAATCACTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTGCCTTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAGAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCATCATACTTCCATTATTGTCGGTCACTGAGGTTTGATGATAAACCAGATTATGCTTATCTGAAAAGACTTTTGCGTGATCTATTCATCCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTTCCACTCCTCCTTCCCGTGGTATTGGTCTTGCTGCCGGCCCAAGTTCTGGTCTGCCACTAGCTTCTGCAAATGCTGATGGACAGCCAGGTGGAAAAGATGGTAGGCATATTGGGTGGTCCTCAACTGATCCCACTCGTAGGAGAAACTCTGGACCTATTGCCATTGATGGAATCTTATCTAGAGAAAAAGCCCCGGTTACAAATGACTTAACTGGATCTAAAGATGCTATGGTTCCAAGTTCGAATTTCTTTCGGCCAAGTGGGTCTGCAAGGCAAAACGCCATCTCAAGCAACCGTGATGCAGTTGTTGACAGTGAGACTGAGCCTTCCTCCCGTCCTCCCACGCAGGACCCGAGTCAAGGAGCTATCCGTAAAAGCTCTGGTGCTCAGAGAAGTTCACATATCATGTCATCTGAGCACAACCGAGTATCATCCGGAAGAAACACATCAAACATAAAGAATTTGGATTCAACTCTTAGAGGTATTGAGAGTCTGCATTTAAACGATGAGAGGGCACAGTATTAG 1422 0.4226 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAVKLENAKTKHPQLLYESKLYKLLQGGTGIPNAKWSGVEGEYNVLVMDLLGPSLEDLFNFCNRKLSLKTVLMLADQMINRVEFVHTKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKFRDSNNQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLLRDLFIREGFQFDYVFDWTILKYQQSQISTPPSRGIGLAAGPSSGLPLASANADGQPGGKDGRHIGWSSTDPTRRRNSGPIAIDGILSREKAPVTNDLTGSKDAMVPSSNFFRPSGSARQNAISSNRDAVVDSETEPSSRPPTQDPSQGAIRKSSGAQRSSHIMSSEHNRVSSGRNTSNIKNLDSTLRGIESLHLNDERAQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01330 473 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Vifa4g01330 473 MobiDBLite consensus disorder prediction 372 454 - -
Vifa4g01330 473 FunFam Putative Casein kinase I 1 85 - -
Vifa4g01330 473 FunFam Casein kinase I isoform delta-like 1 307 - -
Vifa4g01330 473 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Vifa4g01330 473 PANTHER CASEIN KINASE-RELATED 13 423 - -
Vifa4g01330 473 MobiDBLite consensus disorder prediction 318 454 - -
Vifa4g01330 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa4g01330 473 CDD STKc_CK1_delta_epsilon 8 281 - -
Vifa4g01330 473 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01330 473 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01330 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa4g01330 473 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01330 Vifa-Chr4 396188829 396193617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01330 7 222 EF-hand Containing Proteins AT2G17890 26.339 1.21e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa4g01330 Pkinase 5.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01330 K02218 - gmx:100787808 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00307 5 48037657 48042411 Vifa4g01330 4 396188829 396193617 PCT