Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01326 ATGGGGAATCAAAAGCTGAAATGGACGCAAGAAGAAGAAGACGCGCTTATCGCTGGAATCGACAAACACGGCACTGGAAAATGGAAAACCATTCTCGTTGATCCTCAGTTCGCTCATTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATATGAATGTTTATGTGAATAATGGTTCACAAGGTTCTAGTTCTAGGACTCCCAAGCCTAAAGCTGCTCCTGTTTCTTCCAGTGCCGTTCCTCTAATTTCTGCTCCTCCTTCTGATACTGTTGTTGTTGTTGCCTCTGATCCTTCTCCAAATGAACAAGAGGTTAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGACGCTCTATCTACGTTAAAGGATACTAATGGGTCCGACCTAAATGCCATTGCTAGTTTCATTGAGCAAAAGCACCAGCAGGTTCCTCAAAATTTCAGAAGGGCACTGAGTTCAAGGCTGAGGACCCTTGTGAATCAAGGGAAGCTTGAAAAGGTACTAAATTGTTACAAGATAAAAAAAGACGCCCCATTGGTGACAAAAACACCTTCACCTTCACCAAAACAAAAGGATGTAAAGCCGCAACGTCAATCATCGGACTCCGATGATATGCTGAAGAAAGCAGCTGATACTGCAGCATACATAATTGCTGAGGCTGAAGATAAATCATACCTGGCAAGTGAGGCAGTCAAGGAAACCGAACGATTCGCACGATTGGCTGAAGAAAATGATGCAGTGTTGTTGCTAGCAGAAAAACTTTATGAACAATGTTTGCGCGGTGAAACTTTCAAATGGGCTTAA 819 0.4274 MGNQKLKWTQEEEDALIAGIDKHGTGKWKTILVDPQFAHLLTSRSNIDLKDKWRNMNVYVNNGSQGSSSRTPKPKAAPVSSSAVPLISAPPSDTVVVVASDPSPNEQEVKNPPRYNAMVFDALSTLKDTNGSDLNAIASFIEQKHQQVPQNFRRALSSRLRTLVNQGKLEKVLNCYKIKKDAPLVTKTPSPSPKQKDVKPQRQSSDSDDMLKKAADTAAYIIAEAEDKSYLASEAVKETERFARLAEENDAVLLLAEKLYEQCLRGETFKWA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01326 272 SMART h15plus2 109 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa4g01326 272 CDD H15 113 172 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa4g01326 272 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
Vifa4g01326 272 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 111 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa4g01326 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 64 IPR017930 -
Vifa4g01326 272 PANTHER SINGLE MYB HISTONE 4 1 268 IPR044597 GO:0003691
Vifa4g01326 272 SUPERFAMILY "Winged helix" DNA-binding domain 111 188 IPR036390 -
Vifa4g01326 272 FunFam Telomere repeat-binding factor 1 2 58 - -
Vifa4g01326 272 CDD SANT_TRF 7 57 - -
Vifa4g01326 272 MobiDBLite consensus disorder prediction 184 210 - -
Vifa4g01326 272 Pfam linker histone H1 and H5 family 113 172 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa4g01326 272 SMART sant 4 59 IPR001005 -
Vifa4g01326 272 MobiDBLite consensus disorder prediction 60 76 - -
Vifa4g01326 272 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vifa4g01326 272 Gene3D - 107 200 IPR036388 -
Vifa4g01326 272 MobiDBLite consensus disorder prediction 60 79 - -
Vifa4g01326 272 Gene3D - 2 59 - -
Vifa4g01326 272 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01326 Vifa-Chr4 394731413 394734513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01326 1 272 Single Myb Histone (SMH) Gene Family AT1G72740 46.316 1.87e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g01326 Linker_histone 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01326 K09422 - gmx:780537 314.309