Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01305 ATGCAAAGGATTAATTCAGATTGCGAAACCACCATCAAAACCACCGTCATTCCAATCAATGCCGGCCGGAATAGCCAAGTCGCCGTCAAATGGGCCGTGGATCATCTTCTAAAGAAGAATTCCAATTGTGTCCTTATTCATGTTCGTACCAAACCCATCACCAATTCCAATGATAATGTCGACGAAGATGTTCCTAAACACGGCCGTCCGCCGACTCAAGAAGAATTGCATCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCTAGAAAAGGGATTGAGGCAAAGGAATTGGTCTTACACGACATCGATGTTCCGAGCGCGCTTACTGATTATGCGATTGAAAATTCTGTCAACAATGTTGTTGTTGGTGCTTGTTCTTCCCCATGGAGTGCTTTTATAAGAAGATTTAAAGAAGTAGATGTTGCATCTACCTTAGCTAAGACATTGCCAGAATCATCCACATTGTATGTTATATCGAAAGGAAAAGTACAAATGATTCGACCATCCGGGCCTCCGATTCCTCAAGACGATCAATCTAAGAACATCGAAGCTACACCGCCTAAACCTATAAGAGATATCGTCGCACTCTTGCAGAATGCTCAATTGGTTCAACCGAAAAAGTTTCTCGATGATTCAAACAGGAAACCGATGAAAGATGCAGGCAATGTTTGGGAGTTAGATATGGAAGATGTTATACTAGTGACACCGTCTTTGGCGAATAATGTTGAAGATAACAATTCGCCAAGAGGTCCAAGATTATCGGCGGGAAGCCTCTCGACACAAACTTCATCGAATCAAACATCTCCTGCCAACAGTAATGACAGTTCAGGGAAATGTAGTTCTGGAAACCATGAAGTAATAAGTTCAGACAGTTTCAAGTGCTTGTTTTCGCCAAAACCACCGATACAGACGAACTTTGAGGCGGAAATAAAAAAATTAAAACTAGAATTGAAGAAAACGTCGGAGCAGTATGGTATGGCTTGCAGAGAAGCAGTTTTTGCGAAACAGAAGACGACTGAGCTTGAAAAGTTTAGGGAAGAAAAAGAACGAAACGTGGAAAAAGCAAGGCTTGCAGAAGAGGCTGCATTAGCTTTAGCACAAGTAGAGAGACAGAAAGCGAGAGTTGCTATGGAATCAGCAGAAATGTTGCAGCGTCTTGCAGAAATGGAAACTCAGAAGAGAAAGCTAGCTGAATTAAAAGCGAAACACCAGGAAGAAGAGAGGAGAAAGACATTACAAGATGTTGTGTTTAATAGTATTCCGTATAGAAGATACAATATTACAGAAATTGAAGTTGCAACTAATGGTTTCAACGATGCTCTCAAAATCGGTGAAGGAGGGTATGGACCTGTTTTTAAAGGTGTCCTTGATCACACCGTTGTTGCCATAAAGGTTCTTCGACCTGATTTAGCTCATGGAGAAAGACAATTTCAACAAGAGGTTATTGTTTTGAGCACCATAAGACATCCCAACATGGTGCTCCTTCTAGGTGCGTGTCCAGAGTTCGGATGCCTTGTCTACGAACACATGGACTACGGAAGTTTAGAAGATCGCCTATTCAGAAAAGATCACACTCCACCAATTCCATGGAAAGATCGTTTTAGAATCGCATCAGAGATTGCGACTGGCCTTCTTTTCCTTCACCAAGCAAAGCCTGAGCCAATAGTACATCGCGATATGAAACCAGCAAACATTCTCTTAACAAAAAACTGTGTCAGCAAGATCAGCGATGTTGGCTTGGCACGTCTCGTTCCAGCTTCCGTACCTAACAAAACCACTCAATATCGCTTCACAGGTGCGGCCGGAACATTTTTTTACATTGATCCGGAGTATCAACAAACCGGGTTATTAGGTGTGAAATCGGATATATATTCATTCGGCATGGTGTTACTACAGATTATTACTGCAAAACCTCCAATGGGATTGTCTCATTTGGTTGAAGAAGCTATTAGAGAAGGGAACTTCTTAGATGTGCTTGATCCAAGTGTACCAGATTGTCCTGTTCAAGAGGCTTTGACAATAGCAAAGTTGGCGATAAAGTGTTGTGAGTTGCGAAAACGCGATAGACCTGATCTTAGTACTGTTATTTTGCCAGAGCTTAATAGAATATCACAGATTTGGAACTGTGATGAGGATTGA 2139 0.4165 MQRINSDCETTIKTTVIPINAGRNSQVAVKWAVDHLLKKNSNCVLIHVRTKPITNSNDNVDEDVPKHGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPSALTDYAIENSVNNVVVGACSSPWSAFIRRFKEVDVASTLAKTLPESSTLYVISKGKVQMIRPSGPPIPQDDQSKNIEATPPKPIRDIVALLQNAQLVQPKKFLDDSNRKPMKDAGNVWELDMEDVILVTPSLANNVEDNNSPRGPRLSAGSLSTQTSSNQTSPANSNDSSGKCSSGNHEVISSDSFKCLFSPKPPIQTNFEAEIKKLKLELKKTSEQYGMACREAVFAKQKTTELEKFREEKERNVEKARLAEEAALALAQVERQKARVAMESAEMLQRLAEMETQKRKLAELKAKHQEEERRKTLQDVVFNSIPYRRYNITEIEVATNGFNDALKIGEGGYGPVFKGVLDHTVVAIKVLRPDLAHGERQFQQEVIVLSTIRHPNMVLLLGACPEFGCLVYEHMDYGSLEDRLFRKDHTPPIPWKDRFRIASEIATGLLFLHQAKPEPIVHRDMKPANILLTKNCVSKISDVGLARLVPASVPNKTTQYRFTGAAGTFFYIDPEYQQTGLLGVKSDIYSFGMVLLQIITAKPPMGLSHLVEEAIREGNFLDVLDPSVPDCPVQEALTIAKLAIKCCELRKRDRPDLSTVILPELNRISQIWNCDED 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01305 712 Gene3D HUPs 10 160 IPR014729 -
Vifa4g01305 712 Pfam Universal stress protein family 13 126 IPR006016 -
Vifa4g01305 712 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 125 - -
Vifa4g01305 712 SUPERFAMILY Protein kinase-like (PK-like) 412 696 IPR011009 -
Vifa4g01305 712 PANTHER OS02G0152300 PROTEIN 19 705 - -
Vifa4g01305 712 SMART serkin_6 437 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01305 712 Pfam Protein tyrosine and serine/threonine kinase 442 695 IPR001245 GO:0004672|GO:0006468
Vifa4g01305 712 Coils Coil 303 323 - -
Vifa4g01305 712 Gene3D Transferase(Phosphotransferase) domain 1 510 709 - -
Vifa4g01305 712 CDD STK_N 14 161 - -
Vifa4g01305 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Vifa4g01305 712 ProSiteProfiles Protein kinase domain profile. 437 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01305 712 Gene3D Phosphorylase Kinase; domain 1 417 509 - -
Vifa4g01305 712 MobiDBLite consensus disorder prediction 239 282 - -
Vifa4g01305 712 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 409 509 - -
Vifa4g01305 712 Coils Coil 334 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01305 Vifa-Chr4 390287968 390291240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01305 15 712 Receptor kinase-like Gene Family AT1G17540 45.254 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa4g01305 PK_Tyr_Ser-Thr 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01305 - - gmx:100799611 897.116