Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01297 ATGGACTCGCGCGCACAGTATAATCCTCGTACCGTTGAAGAGGTTTTTAGGGATTTCAAGGGTCGTCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGATAAGGAGAATTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCTGAAGAAGTTCCACCGGAGCTTCCCGAGCCTGTGCTCGGAATCAACTTTGCTAGGGATGGCATGCAGGAAAAAGATTGGCTTTCTTTAGTTGCTGTTCATAGTGATTCATGGTTACTCGCTATTGCCTACTATTTCGGAGCCAGATTCGGGTTTGACAAATCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCATCGATATTTGAAGTTGTTACTGGTACAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCAGTTTCAAACCACAGTGGAAGCAAATCCAAGTCCAGCTCAAAAGTGCGAGCTCCCGAACACCAGGTTAAGCAGACAAAGGCATTAGAACCAAAAGACGAGGAAGAAGAACTGGACGAGGAAGATGAAGATGAACACGGAGAGACCTTATGTGGTGCATGCGGTGAGCATTATGGAACAGACGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAACAAGAGAGCTCGCCCATAA 765 0.451 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGTAKKQVKEKSSVSNHSGSKSKSSSKVRAPEHQVKQTKALEPKDEEEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01297 254 Pfam PHD-finger 200 248 IPR019787 -
Vifa4g01297 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Vifa4g01297 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vifa4g01297 254 SMART PHD_3 199 247 IPR001965 -
Vifa4g01297 254 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Vifa4g01297 254 MobiDBLite consensus disorder prediction 145 193 - -
Vifa4g01297 254 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Vifa4g01297 254 CDD PHD_AL_plant 199 249 IPR044104 -
Vifa4g01297 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Vifa4g01297 254 MobiDBLite consensus disorder prediction 145 162 - -
Vifa4g01297 254 FunFam PHD finger alfin-like protein 192 248 - -
Vifa4g01297 254 MobiDBLite consensus disorder prediction 163 181 - -
Vifa4g01297 254 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01297 Vifa-Chr4 388754931 388758077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01297 5 253 Alfin-like Transcription Factor Family AT3G42790 74.699 2.74e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa4g01297 Alfin 3.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01297 K26274 - gmx:100794662 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01297 4 388754931 388758077 Vifa5g00317 5 50375976 50379342 ECH
Vifa4g01297 4 388754931 388758077 Vifa4g01297 4 388754931 388758077 ECH
Vifa5g00317 5 50375976 50379342 Vifa4g01297 4 388754931 388758077 PCT