Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01295 ATGAAGCATTCATTGCCATGGAGAACTCCTTCTGAATCTGATGTGCAACAATCTTCCGTATCTGAAAATCTTACCTTGAAAATGAGTGTTTTGCCACAACAATGCCATAAGACTAAGCCCTTGGATTTGCAATTTCAAGATCAAGATTCTTCCTCTACTCAATCAACTGATCAATCTTATCTCGAAGTCGGTTCGGGTCATTCAGGTCCAATTTCTGTCCAGTATAGCAACTCTTCTGCGTTCCCTCATGCTGAGGCATGCTTTAGTGGCCCAATAGCAGCTCCAAATGGATCACAGAATAATATTCATCATGCTCAGCTAGTTGGAATGCCTCCGGTTCGGGTTCCTTTGCCTCTTGATCTTTGTGAGGAACCTATATATGTGAACGCGAAGCAATACCATGCTATTATGAGACGTAGAGAGTATCGTGCAAAGCTCGAAGCACAAAACAAACTCATCAAAAATCGGAAACCATATCTACACGAATCGCGTCATCTGCATGCGTTGAAGAGAGCTAGAGGGACCGGTGGACGTTTTCTAAACACCAAACAGCTCCAAGAACTAAAGCTTACTTCAGCACAAGACGGCCTTAATGTTTCCACCACTACTCGATTGAATCCGAGTGAAAGTGTGTCTAAATCTAAGGCGAATCAAGTAGAAAACCATAGAGAAGGTGCTTCTGCAACCACATGTTCTGATGACACAAGTGCTTCTAATAGTAATGACATGTTCCAACAACATGAATCTGACTTCAGATCATGTGGTCACCCTTCTCAAATGCAGGGTTTCTCGGCCGAAAGCGGTGGTGGTGGTGAAAATCAACACCACCTATCAGTCCTTATGTGA 846 0.4326 MKHSLPWRTPSESDVQQSSVSENLTLKMSVLPQQCHKTKPLDLQFQDQDSSSTQSTDQSYLEVGSGHSGPISVQYSNSSAFPHAEACFSGPIAAPNGSQNNIHHAQLVGMPPVRVPLPLDLCEEPIYVNAKQYHAIMRRREYRAKLEAQNKLIKNRKPYLHESRHLHALKRARGTGGRFLNTKQLQELKLTSAQDGLNVSTTTRLNPSESVSKSKANQVENHREGASATTCSDDTSASNSNDMFQQHESDFRSCGHPSQMQGFSAESGGGGENQHHLSVLM 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01295 281 SMART cbf3 121 182 IPR001289 GO:0003700|GO:0006355
Vifa4g01295 281 MobiDBLite consensus disorder prediction 44 67 - -
Vifa4g01295 281 MobiDBLite consensus disorder prediction 1 20 - -
Vifa4g01295 281 MobiDBLite consensus disorder prediction 199 281 - -
Vifa4g01295 281 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 124 179 IPR001289 GO:0003700|GO:0006355
Vifa4g01295 281 Gene3D - 122 183 - -
Vifa4g01295 281 PRINTS CCAAT-binding transcription factor subunit B signature 125 147 IPR001289 GO:0003700|GO:0006355
Vifa4g01295 281 PRINTS CCAAT-binding transcription factor subunit B signature 156 179 IPR001289 GO:0003700|GO:0006355
Vifa4g01295 281 ProSitePatterns NF-YA/HAP2 subunit signature. 127 147 IPR018362 GO:0003677|GO:0016602
Vifa4g01295 281 ProSiteProfiles NF-YA/HAP2 family profile. 122 182 IPR001289 GO:0003700|GO:0006355
Vifa4g01295 281 MobiDBLite consensus disorder prediction 199 268 - -
Vifa4g01295 281 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 261 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01295 Vifa-Chr4 388471002 388472508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01295 11 281 CCAAT-HAP2 Transcription Factor Family AT3G14020 40.256 4.11e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa4g01295 CBFB_NFYA 6.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01295 K08064 - gmx:100500765 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01295 4 388471002 388472508 Vifa4g01295 4 388471002 388472508 ECH
Vifa1g00826 1 140639769 140641868 Vifa4g01295 4 388471002 388472508 PCT