Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01278 ATGCCATTTCTCGAAAGCATTCCTCTGAAGAGAGACGATTGCACCGCGTCTCCCTCCTCCAACGAGCACACTGCAATTGATCTTGATTATTACAGTACAATTGAAGAGCTTATAGAAGTGGATCCTGAAAGGTTAAAGGAGGCACTGGCTGCACTAGGACTTAAAACTGGCGGCACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCACCAAGCATACACCTCTTGAAAAGTTGGACAAGAGGCATTTTATCAAGGGGGCACGGGGTTTAGAAAATAATGGGGTGGCTGCTGCTCCGCAAGAAGGAAATTTAAAACAAGAAAATTTGAAAGAAGTTGCATAA 342 0.4503 MPFLESIPLKRDDCTASPSSNEHTAIDLDYYSTIEELIEVDPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKRHFIKGARGLENNGVAAAPQEGNLKQENLKEVA 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01278 113 Pfam Replication stress response SDE2 C-terminal 16 85 IPR025086 -
Vifa4g01278 113 MobiDBLite consensus disorder prediction 91 113 - -
Vifa4g01278 113 PANTHER SPLICING FACTOR SF3A-RELATED 22 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01278 Vifa-Chr4 385071771 385075864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01278 21 113 C2H2 Transcription Factor Family AT5G06160 64.516 2.38e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01278 K12827 - pvy:116133286 145.976