Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01276 ATGGCATTTTCATCTTCTCAACAAATGTATCTCCCAATTGGGATTCTAATCATTGGAGTACCAGTAATTGCTTTTATATTTTTCTCTCTCACAATGTTAGGATGGTGCAAGATTACCAATCATGAATCTACTCTTCCTACAACAGGCATAACTTTTGATGAGAAACTTTCTGCTTGCATGAGTTTAGAGTCACACTCAATAACATTTATGTACAAGGAAGGTGAGGATGCAAAAGGCATAAACCAGACCGAATGTGTTATCTGTTTAACAGTCTTTCGAGAAGACGAAAGTGTTCGCAAGCTTCACACTTGCAAGCACATGTTTCATACATCTTGCATCGATAAGTGGCTTTGTTCTCGTTCTGGCTGTCCACTTTGTCGCTCGCAGATTGACCAAATAACTTTGCCAAATTATTCAGTGGCAAATGAACAGATGATTGTGGACATTGTTGACTCTAGAATTTGA 465 0.3828 MAFSSSQQMYLPIGILIIGVPVIAFIFFSLTMLGWCKITNHESTLPTTGITFDEKLSACMSLESHSITFMYKEGEDAKGINQTECVICLTVFREDESVRKLHTCKHMFHTSCIDKWLCSRSGCPLCRSQIDQITLPNYSVANEQMIVDIVDSRI 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01276 154 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Vifa4g01276 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Vifa4g01276 154 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 131 IPR044675 -
Vifa4g01276 154 SMART ring_2 85 126 IPR001841 -
Vifa4g01276 154 Pfam Ring finger domain 84 127 IPR001841 -
Vifa4g01276 154 SUPERFAMILY RING/U-box 84 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01276 Vifa-Chr4 385068057 385068521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01276 65 139 C3H Transcription Factor Family AT1G72220 51.282 8.92e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01276 - - mtr:25500542 231.106