Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01275 ATGAAAACAGTGATTGGAATTGAGGATTATGATCATGGGAAGCTTGAAGACAGTAGAGTTGATAGAAGCAGTTCTGCTTTGTCTTTGCCTAAGCAGATTTCTAACCCGGTTGTGTACAAACTTGTTCGGGTTGAGGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCGTCTCGATCACCCATTCGTTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCATAAATGAGAAGGACCAAGAAGCACCTTCTATAGCATCGAGTTTAAATTATTGTCATAGTAACCAATCTGGGAGTATTGATCAGTGTTCCAGACCTTCAGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCCCTTTGAAGCCTGAATTTTCCATGACAGACGGAGAAATATGTTTAGACAAGCTGTCGATCAAAGAACTTCATGAACTGTTTAAAGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAAGAGGAGGATTGCTATGAGTTTAACTAACTCTTGTGATGTTTCGGCAACAACATTCACTATTAAAGATAGCAAAATAACTAGAAAACGGGAAGAAGAATGTTCTGCAAATGTGAATGCTGCAGCTGTAATCTCTGTGGAAAATATGGCTGGAGAAGGGGATGTCAAGTATGTGGATTCATATGCAGTGGAGGGTTACAGAGATGATGATAACCAAGTTGCTTCTGAAACAAGACTGGAAAATCATAATACGGAACATGAATTAGGAGACGAGGATCAGCGGAGAGAACAAAGAGCTGCAAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGCCATCAAGTTCTAATAAAAATACAGGACACAGTCATGTTTCTCCAACTTCTTACATCAGGCCTGCTAGGAATGCTTTTCCGGAGGTAAGAACATTTGTCACCAGGTTAGACTCACTTGTAGGTTCTGGTGTCCAAATTCCACGTGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATCACGTCTCTTATGAAATTCCATCCAACTGGCATGGTCGAAGCTGCAAAATTAAGCAATAATACCGTCAGCGATCATGGTTCTGACACTGATAGTGAGATTCAGGAGAAAGTCTCAATGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCGTCTACTTCTGAGTCTGGAAAAGAGAAGCAGTGTCCAGTAATTGGTACAACTGAACCAAGGCAGGAATTGAGACCAAAAAAGATTGATCCACCTAGTCATACTGCAGAGAGCAACATGGTAACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGCTGAGGTAACCAAATTGATTGAAGGTGTGTCGCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGACAATCCTTTTCCTCGTACTCACATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCTCATACACCTGCAGATGAGGGGATGAATTCTCGAAAGCATGGTACGGCTCCGATTCCCGAGCATATTTTAGTCCGTGTAAGAGATCTTGCAGTGATGAATTCTCAGGTTCCTCCACATTTCAGCTCAAGCAAGTTAACAACTGGTGCAGCTAGTGTGCATGGAGATAGATTGGGGTACTTGTAG 1962 0.4261 MKTVIGIEDYDHGKLEDSRVDRSSSALSLPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTAEADLGKLNAKFQMLQKVKQEEKLRLSSRSPIRSHVQIDSQCSADKFPVINEKDQEAPSIASSLNYCHSNQSGSIDQCSRPSEGMIESGSSASAVYSPLKPEFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFTIKDSKITRKREEECSANVNAAAVISVENMAGEGDVKYVDSYAVEGYRDDDNQVASETRLENHNTEHELGDEDQRREQRAAKRMRKPTKRYIEELSENESREYNPRPSSSNKNTGHSHVSPTSYIRPARNAFPEVRTFVTRLDSLVGSGVQIPRVSRVRRSRPRKNITSLMKFHPTGMVEAAKLSNNTVSDHGSDTDSEIQEKVSMPSSMPVKIHQPSTSESGKEKQCPVIGTTEPRQELRPKKIDPPSHTAESNMVTVPTAKGGMRRKHHRAWTLAEVTKLIEGVSRCGPGRWSEIKRQSFSSYSHRTSVDLKDKWRNLLKASFAHTPADEGMNSRKHGTAPIPEHILVRVRDLAVMNSQVPPHFSSSKLTTGAASVHGDRLGYL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01275 653 MobiDBLite consensus disorder prediction 454 494 - -
Vifa4g01275 653 MobiDBLite consensus disorder prediction 369 391 - -
Vifa4g01275 653 MobiDBLite consensus disorder prediction 327 392 - -
Vifa4g01275 653 SUPERFAMILY Homeodomain-like 539 598 IPR009057 -
Vifa4g01275 653 Gene3D - 528 634 - -
Vifa4g01275 653 MobiDBLite consensus disorder prediction 327 347 - -
Vifa4g01275 653 ProSiteProfiles Myb-like domain profile. 541 588 IPR001005 -
Vifa4g01275 653 Pfam Myb-like DNA-binding domain 540 588 IPR001005 -
Vifa4g01275 653 SMART sant 537 590 IPR001005 -
Vifa4g01275 653 MobiDBLite consensus disorder prediction 354 368 - -
Vifa4g01275 653 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 636 - -
Vifa4g01275 653 MobiDBLite consensus disorder prediction 454 522 - -
Vifa4g01275 653 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 533 592 IPR017930 -
Vifa4g01275 653 CDD SANT_TRF 539 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01275 Vifa-Chr4 384781449 384789646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01275 541 587 Single Myb Histone (SMH) Gene Family AT1G72740 44.898 1.04e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g01275 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01275 - - tpra:123883109 1040.41