Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01274 ATGAAAACAGTGATTGGAATTGAGGATTATGATCATGGGAAGCTTGAAGACAGTAGAGTTGATAGAAGCAGTTCTGCTTTGTCTTTGCCTAAGCAGATTTCTAACCCGGTTGTGTACAAACTTGTTCGGGTTGAGGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCAGAAGGTGTTTCACAATTAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATATTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCGTCTCGATCACCCATTCGTTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCATAAATGAGAAGGACCAAGAAGCACCTTCTATAGCATCGAGTTTAAATTATTGTCATAGTAACCAATCTGGGAGTATTGATCAGTGTTCCAGACCTTCAGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCCCTTTGAAGCCTGAATTTTCCATGACAGACGGAGAAATATGTTTAGACAAGCTGTCGATCAAAGAACTTCATGAACTGTTTAAAGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAAGAGGAGGATTGCTATGAGTTTAACTAACTCTTGTGATGTTTCGGCAACAACATTCACTATTAAAGATAGCAAAATAACTAGAAAACGGGAAGAAGAATGTTCTGCAAATGTGAATGCTGCAGCTGTAATCTCTGTGGAAAATATGGCTGGAGAAGGGGATGTCAAGTATGTGGATTCATATGCAGTGGAGGGTTACAGAGATGATGATAACCAAGTTGCTTCTGAAACAAGACTGGAAAATCATAATACGGAACATGAATTAGGAGACGAGGATCAGCGGAGAGAACAAAGAGCTGCAAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGCCATCAAGTTCTAATAAAAATACAGGACACAGTCATGTTTCTCCAACTTCTTACATCAGGCCTGCTAGGAATGCTTTTCCGGAGGTAAGAACATTTGTCACCAGGTTAGACTCACTTGTAGGTTCTGGTGTCCAAATTCCACGTGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATCACGTCTCTTATGAAATTCCATCCAACTGGCATGGTCGAAGCTGCAAAATTAAGCAATAATACCGTCAGCGATCATGGTTCTGACACTGATAGTGAGATTCAGGAGAAAGTCTCAATGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCGTCTACTTCTGAGTCTGGAAAAGAGAAGCAGTGTCCAGTAATTGGTACAACTGAACCAAGGCAGGAATTGAGACCAAAAAAGATTGATCCACCTAGTCATACTGCAGAGAGCAACATGGTAACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGCTGAGGTAACCAAATTGATTGAAGGTGTGTCGCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGACAATCCTTTTCCTCGTACTCACATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCTCATACACCTGCAGATGAGGGGATGAATTCTCGAAAGCATGGTACGGCTCCGATTCCCGAGCATATTTTAGTCCGTGTAAGAGATCTTGCAGTGATGAATTCTCAGGTTCCTCCACATTTCAGCTCAAGCAAGTTAACAACTGGTGCAGCTAGTGTGCATGGAGATAGATTGGGGTACTTGTAG 1974 0.425 MKTVIGIEDYDHGKLEDSRVDRSSSALSLPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTAEADLGKLNAKFQYIEQMLQKVKQEEKLRLSSRSPIRSHVQIDSQCSADKFPVINEKDQEAPSIASSLNYCHSNQSGSIDQCSRPSEGMIESGSSASAVYSPLKPEFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFTIKDSKITRKREEECSANVNAAAVISVENMAGEGDVKYVDSYAVEGYRDDDNQVASETRLENHNTEHELGDEDQRREQRAAKRMRKPTKRYIEELSENESREYNPRPSSSNKNTGHSHVSPTSYIRPARNAFPEVRTFVTRLDSLVGSGVQIPRVSRVRRSRPRKNITSLMKFHPTGMVEAAKLSNNTVSDHGSDTDSEIQEKVSMPSSMPVKIHQPSTSESGKEKQCPVIGTTEPRQELRPKKIDPPSHTAESNMVTVPTAKGGMRRKHHRAWTLAEVTKLIEGVSRCGPGRWSEIKRQSFSSYSHRTSVDLKDKWRNLLKASFAHTPADEGMNSRKHGTAPIPEHILVRVRDLAVMNSQVPPHFSSSKLTTGAASVHGDRLGYL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01274 657 MobiDBLite consensus disorder prediction 458 498 - -
Vifa4g01274 657 Pfam Myb-like DNA-binding domain 544 592 IPR001005 -
Vifa4g01274 657 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 640 - -
Vifa4g01274 657 MobiDBLite consensus disorder prediction 373 395 - -
Vifa4g01274 657 MobiDBLite consensus disorder prediction 331 396 - -
Vifa4g01274 657 ProSiteProfiles Myb-like domain profile. 545 592 IPR001005 -
Vifa4g01274 657 SMART sant 541 594 IPR001005 -
Vifa4g01274 657 MobiDBLite consensus disorder prediction 331 351 - -
Vifa4g01274 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 537 596 IPR017930 -
Vifa4g01274 657 MobiDBLite consensus disorder prediction 358 372 - -
Vifa4g01274 657 MobiDBLite consensus disorder prediction 458 526 - -
Vifa4g01274 657 SUPERFAMILY Homeodomain-like 543 602 IPR009057 -
Vifa4g01274 657 CDD SANT_TRF 543 593 - -
Vifa4g01274 657 Gene3D - 532 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01274 Vifa-Chr4 384781449 384789646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01274 545 591 Single Myb Histone (SMH) Gene Family AT1G72740 44.898 9.83e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g01274 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01274 - - tpra:123883109 1054.28