Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01273 ATGAAAACAGTGATTGGAATTGAGGATTATGATCATGGGAAGCTTGAAGACAGTAGAGTTGATAGAAGCAGTTCTGCTTTGTCTTTGCCTAAGCAGATTTCTAACCCGGTTGTGTACAAACTTGTTCGGGTTGAGGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTTTGGAATGCATATCAATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCAGAAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGTATATTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCGTCTCGATCACCCATTCGTTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCATAAATGAGAAGGACCAAGAAGCACCTTCTATAGCATCGAGTTTAAATTATTGTCATAGTAACCAATCTGGGAGTATTGATCAGTGTTCCAGACCTTCAGAAGGAATGATAGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCCCTTTGAAGCCTGAATTTTCCATGACAGACGGAGAAATATGTTTAGACAAGCTGTCGATCAAAGAACTTCATGAACTGTTTAAAGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAAGAGGAGGATTGCTATGAGTTTAACTAACTCTTGTGATGTTTCGGCAACAACATTCACTATTAAAGATAGCAAAATAACTAGAAAACGGGAAGAAGAATGTTCTGCAAATGTGAATGCTGCAGCTGTAATCTCTGTGGAAAATATGGCTGGAGAAGGGGATGTCAAGTATGTGGATTCATATGCAGTGGAGGGTTACAGAGATGATGATAACCAAGTTGCTTCTGAAACAAGACTGGAAAATCATAATACGGAACATGAATTAGGAGACGAGGATCAGCGGAGAGAACAAAGAGCTGCAAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGTACAATCCTAGGCCATCAAGTTCTAATAAAAATACAGGACACAGTCATGTTTCTCCAACTTCTTACATCAGGCCTGCTAGGAATGCTTTTCCGGAGGTAAGAACATTTGTCACCAGGTTAGACTCACTTGTAGGTTCTGGTGTCCAAATTCCACGTGTTTCTCGGGTTCGAAGAAGCCGTCCAAGGAAAAATATCACGTCTCTTATGAAATTCCATCCAACTGGCATGGTCGAAGCTGCAAAATTAAGCAATAATACCGTCAGCGATCATGGTTCTGACACTGATAGTGAGATTCAGGAGAAAGTCTCAATGCCAAGTTCCATGCCTGTGAAGATTCATCAGCCGTCTACTTCTGAGTCTGGAAAAGAGAAGCAGTGTCCAGTAATTGGTACAACTGAACCAAGGCAGGAATTGAGACCAAAAAAGATTGATCCACCTAGTCATACTGCAGAGAGCAACATGGTAACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACCCTTGCTGAGGTAACCAAATTGATTGAAGGTGTGTCGCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGACAATCCTTTTCCTCGTACTCACATCGTACCTCTGTTGATCTCAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCTCATACACCTGCAGATGAGGGGATGAATTCTCGAAAGCATGGTACGGCTCCGATTCCCGAGCATATTTTAGTCCGTGTAAGAGATCTTGCAGTGATGAATTCTCAGGTTCCTCCACATTTCAGCTCAAGCAAGTTAACAACTGGTGCAGCTAGTGTGCATGGAGATAGATTGGGGTACTTGTAG 1959 0.4257 MKTVIGIEDYDHGKLEDSRVDRSSSALSLPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSLECISIERSSSGKLRLECSEGTAEADLGKLNAKFQYIEQMLQKVKQEEKLRLSSRSPIRSHVQIDSQCSADKFPVINEKDQEAPSIASSLNYCHSNQSGSIDQCSRPSEGMIESGSSASAVYSPLKPEFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFTIKDSKITRKREEECSANVNAAAVISVENMAGEGDVKYVDSYAVEGYRDDDNQVASETRLENHNTEHELGDEDQRREQRAAKRMRKPTKRYIEELSENESREYNPRPSSSNKNTGHSHVSPTSYIRPARNAFPEVRTFVTRLDSLVGSGVQIPRVSRVRRSRPRKNITSLMKFHPTGMVEAAKLSNNTVSDHGSDTDSEIQEKVSMPSSMPVKIHQPSTSESGKEKQCPVIGTTEPRQELRPKKIDPPSHTAESNMVTVPTAKGGMRRKHHRAWTLAEVTKLIEGVSRCGPGRWSEIKRQSFSSYSHRTSVDLKDKWRNLLKASFAHTPADEGMNSRKHGTAPIPEHILVRVRDLAVMNSQVPPHFSSSKLTTGAASVHGDRLGYL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01273 652 Pfam Myb-like DNA-binding domain 539 587 IPR001005 -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 368 390 - -
Vifa4g01273 652 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 635 - -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 326 391 - -
Vifa4g01273 652 SUPERFAMILY Homeodomain-like 538 597 IPR009057 -
Vifa4g01273 652 SMART sant 536 589 IPR001005 -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 326 346 - -
Vifa4g01273 652 ProSiteProfiles Myb-like domain profile. 540 587 IPR001005 -
Vifa4g01273 652 Gene3D - 527 633 - -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 353 367 - -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 453 521 - -
Vifa4g01273 652 CDD SANT_TRF 538 588 - -
Vifa4g01273 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 591 IPR017930 -
Vifa4g01273 652 MobiDBLite consensus disorder prediction 453 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01273 Vifa-Chr4 384781449 384789646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01273 540 586 Single Myb Histone (SMH) Gene Family AT1G72740 44.898 1.03e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g01273 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01273 - - tpra:123883109 1039.25